Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11095

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,521,727	+				+0.2
2,521,970	+		BPHYT_RS11095	0.28	-0.6
2,522,033	+		BPHYT_RS11095	0.38	+0.1
2,522,439	+				-0.1
2,522,439	+				-1.3
2,522,687	-		BPHYT_RS11100	0.41	-0.4
2,523,022	+				+0.2
2,523,251	+		BPHYT_RS11105	0.16	+0.8
2,523,311	+		BPHYT_RS11105	0.21	-0.9