Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11050

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,508,402	+		BPHYT_RS11045	0.47	+0.2
2,508,420	+		BPHYT_RS11045	0.48	-0.0
2,508,420	+		BPHYT_RS11045	0.48	-0.3
2,508,495	+		BPHYT_RS11045	0.55	-0.7
2,508,519	+		BPHYT_RS11045	0.57	+0.3
2,508,520	-		BPHYT_RS11045	0.57	-2.3
2,508,919	-				+1.7
2,508,993	-				-0.6
2,509,133	-				+3.8
2,509,133	-				+0.1
2,509,287	-				+1.6
2,510,037	+		BPHYT_RS11050	0.60	-0.4
2,510,854	+		BPHYT_RS11055	0.36	-0.6
2,510,974	+		BPHYT_RS11055	0.52	-0.2
2,510,974	+		BPHYT_RS11055	0.52	+0.6
2,510,975	-		BPHYT_RS11055	0.52	+0.6
2,511,205	+		BPHYT_RS11055	0.82	-1.1
2,511,205	+		BPHYT_RS11055	0.82	+0.1
2,511,248	+		BPHYT_RS11055	0.88	+4.0
2,511,288	+				-1.3
2,511,289	-				+1.6
2,511,289	-				-0.7
2,511,419	-				+1.0
2,511,425	-				-0.2
2,511,504	-				+1.2