Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10950

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,491,325	+		BPHYT_RS10945	0.62	-1.2
2,491,422	-		BPHYT_RS10945	0.75	+0.4
2,491,579	+				+2.0
2,491,580	-				+0.3
2,491,580	-				+2.4
2,491,683	+				+0.9
2,492,150	+		BPHYT_RS10950	0.47	-0.1
2,492,151	-		BPHYT_RS10950	0.47	+0.8
2,492,221	+		BPHYT_RS10950	0.55	+0.4
2,492,222	-		BPHYT_RS10950	0.55	+0.2
2,492,628	+				-0.3
2,492,883	+		BPHYT_RS10955	0.26	+0.4
2,493,311	-		BPHYT_RS10955	0.72	+1.0
2,493,579	-				-1.4
2,493,579	-				+1.8