Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10810

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,456,130	-		BPHYT_RS10805	0.40	+2.2
2,456,423	+		BPHYT_RS10805	0.61	-0.6
2,456,496	-		BPHYT_RS10805	0.66	+0.3
2,456,768	+		BPHYT_RS10805	0.86	-0.3
2,456,768	+		BPHYT_RS10805	0.86	-1.1
2,457,047	-				-0.1
2,457,219	-				+0.0
2,457,767	+		BPHYT_RS10810	0.41	+0.2
2,457,768	-		BPHYT_RS10810	0.41	-1.4
2,458,325	+		BPHYT_RS10810	0.73	-0.0
2,458,325	+		BPHYT_RS10810	0.73	-1.3
2,458,507	+		BPHYT_RS10810	0.84	-0.2
2,458,773	-				+0.3
2,458,804	-				-0.7
2,458,804	-				+1.0
2,458,919	+		BPHYT_RS10815	0.11	+0.0
2,458,919	+		BPHYT_RS10815	0.11	-1.2
2,459,756	-				+0.6
2,459,774	+				-0.8