Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10800

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,453,704	-				+1.2
2,454,521	-				+0.3
2,454,581	+				+0.4
2,454,743	-				-0.5
2,454,857	+				-0.3
2,454,866	+		BPHYT_RS10800	0.22	-1.7
2,454,866	+		BPHYT_RS10800	0.22	-0.7
2,454,867	-		BPHYT_RS10800	0.22	-0.6
2,454,867	-		BPHYT_RS10800	0.22	+0.4
2,455,183	-		BPHYT_RS10800	0.56	+0.5
2,455,586	+				+0.5
2,455,899	+		BPHYT_RS10805	0.23	+0.5
2,455,899	+		BPHYT_RS10805	0.23	+0.4
2,456,130	-		BPHYT_RS10805	0.40	+2.2
2,456,423	+		BPHYT_RS10805	0.61	-0.6
2,456,496	-		BPHYT_RS10805	0.66	+0.3