Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10150

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,309,403	+		BPHYT_RS10145	0.61	+0.3
2,309,404	-		BPHYT_RS10145	0.61	-0.4
2,309,802	+				-0.8
2,309,803	-				-1.6
2,309,803	-				-1.2
2,310,104	+				-0.0
2,310,105	-				-0.8
2,310,116	-				+0.7
2,310,218	+				-0.0
2,310,392	-				+1.7
2,310,394	+		BPHYT_RS10150	0.10	+0.3
2,310,398	+		BPHYT_RS10150	0.10	+5.8
2,310,398	+		BPHYT_RS10150	0.10	-0.4
2,310,399	-		BPHYT_RS10150	0.11	+0.2
2,311,654	+		BPHYT_RS10155	0.29	+0.2
2,311,717	+		BPHYT_RS10155	0.34	+1.3
2,311,717	+		BPHYT_RS10155	0.34	-0.5
2,311,787	-		BPHYT_RS10155	0.40	+0.5
2,311,942	+		BPHYT_RS10155	0.52	+0.8
2,312,162	-		BPHYT_RS10155	0.69	+0.5