Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10000

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,276,868	-		BPHYT_RS09995	0.35	-0.4
2,276,976	-		BPHYT_RS09995	0.43	-0.0
2,276,976	-		BPHYT_RS09995	0.43	+0.4
2,277,293	+		BPHYT_RS09995	0.67	-0.1
2,277,302	-		BPHYT_RS09995	0.67	-1.2
2,277,538	-		BPHYT_RS09995	0.85	+0.1
2,277,538	-		BPHYT_RS09995	0.85	-0.1
2,278,013	+				-2.4
2,278,584	+		BPHYT_RS10000	0.39	+0.5
2,278,586	+		BPHYT_RS10000	0.39	-0.3
2,278,592	+		BPHYT_RS10000	0.39	+0.2
2,278,739	+		BPHYT_RS10000	0.47	+0.1
2,278,739	+		BPHYT_RS10000	0.47	-0.3
2,278,740	-		BPHYT_RS10000	0.47	+0.8
2,278,966	+		BPHYT_RS10000	0.59	-0.3
2,279,061	+		BPHYT_RS10000	0.64	-0.9
2,279,504	+		BPHYT_RS10000	0.88	-0.6
2,279,504	+		BPHYT_RS10000	0.88	+0.3
2,279,504	+		BPHYT_RS10000	0.88	-0.9
2,279,505	-		BPHYT_RS10000	0.88	-0.0
2,279,505	-		BPHYT_RS10000	0.88	-0.8
2,280,111	+		BPHYT_RS10005	0.48	+0.7
2,280,111	+		BPHYT_RS10005	0.48	+1.3
2,280,363	-				+0.7
2,280,369	-				+0.6