Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09755

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,211,852	+		BPHYT_RS09750	0.29	-1.2
2,211,853	-		BPHYT_RS09750	0.29	-0.5
2,211,905	+		BPHYT_RS09750	0.33	+0.3
2,211,905	+		BPHYT_RS09750	0.33	+0.4
2,211,940	-		BPHYT_RS09750	0.36	-0.1
2,212,035	+		BPHYT_RS09750	0.43	-0.5
2,212,888	+				-0.1
2,212,889	-				+0.2
2,212,889	-				+0.3
2,212,889	-				-1.8
2,213,104	+		BPHYT_RS09755	0.25	+1.1
2,213,106	+		BPHYT_RS09755	0.25	+1.0
2,214,036	+				-0.1
2,214,064	+				-0.8
2,214,065	-				-0.4
2,214,647	+		BPHYT_RS09760	0.52	-1.0
2,214,773	+		BPHYT_RS09760	0.64	-1.7