Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09740

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,208,297	-		BPHYT_RS09735	0.53	-0.3
2,208,424	-		BPHYT_RS09735	0.67	+0.3
2,208,871	+				+0.3
2,209,048	-		BPHYT_RS09740	0.18	+0.2
2,209,128	+		BPHYT_RS09740	0.24	+0.2
2,209,206	+		BPHYT_RS09740	0.31	+0.1
2,209,345	+				+3.6
2,209,487	-		BPHYT_RS09740	0.55	-0.1
2,209,487	-		BPHYT_RS09740	0.55	+5.6
2,209,588	+		BPHYT_RS09740	0.63	-1.0
2,209,620	-		BPHYT_RS09740	0.66	-1.4
2,209,717	+		BPHYT_RS09740	0.74	+0.6
2,209,717	+		BPHYT_RS09740	0.74	-1.0
2,209,718	-		BPHYT_RS09740	0.74	-0.3
2,209,742	-		BPHYT_RS09740	0.76	+0.1
2,209,742	-		BPHYT_RS09740	0.76	+0.4
2,210,440	+		BPHYT_RS09745	0.28	-0.4
2,210,441	-		BPHYT_RS09745	0.28	+2.6
2,210,488	+		BPHYT_RS09745	0.31	-0.5
2,210,584	-		BPHYT_RS09745	0.38	-0.2