Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09690

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,194,945	-		BPHYT_RS09685	0.16	-1.2
2,195,008	+		BPHYT_RS09685	0.30	-0.7
2,195,009	-		BPHYT_RS09685	0.30	-0.2
2,195,009	-		BPHYT_RS09685	0.30	-0.4
2,195,038	+		BPHYT_RS09685	0.36	-1.1
2,195,039	-		BPHYT_RS09685	0.36	-0.5
2,195,212	+		BPHYT_RS09685	0.75	-3.1
2,195,320	-				+0.1
2,195,378	-				+0.3
2,195,385	+				+0.6
2,195,385	+				-0.8
2,195,758	-		BPHYT_RS09690	0.66	+2.1
2,195,920	-				-0.7
2,196,129	+				+1.4
2,196,229	+				-0.3
2,196,238	+				+0.2
2,196,313	-				-2.7
2,196,324	+				-1.1
2,196,324	+				-1.3
2,196,457	+		BPHYT_RS09695	0.51	-0.0
2,196,517	-		BPHYT_RS09695	0.71	-0.2
2,196,622	-				-0.2
2,196,698	-				+0.4