Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09650

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,186,706	-		BPHYT_RS09645	0.63	-0.7
2,186,763	-		BPHYT_RS09645	0.71	-2.0
2,186,826	+		BPHYT_RS09645	0.79	-0.8
2,186,827	-		BPHYT_RS09645	0.80	-0.8
2,186,915	+				-1.2
2,186,915	+				-0.4
2,186,915	+				-2.4
2,186,915	+				-0.7
2,186,915	+				-0.9
2,186,916	-				-1.5
2,186,978	+				-0.0
2,187,152	+				+0.2
2,187,157	+				-0.1
2,187,230	-				-0.3
2,187,331	-				-2.0
2,187,481	-		BPHYT_RS09650	0.36	-1.0
2,187,615	+		BPHYT_RS09650	0.73	-3.3
2,187,616	-		BPHYT_RS09650	0.73	+1.6
2,187,919	+				+0.6
2,187,919	+				-0.2
2,187,919	+				+0.6
2,187,919	+				-0.5
2,187,919	+				+0.4
2,187,965	-				-0.4
2,188,161	+				+0.2
2,188,161	+				+0.2
2,188,161	+				-1.7
2,188,161	+				-1.0
2,188,161	+				-1.4
2,188,161	+				+1.5
2,188,162	-				+2.1
2,188,162	-				-0.0
2,188,262	-		BPHYT_RS09655	0.12	+0.0
2,188,518	+		BPHYT_RS09655	0.33	+3.1