Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09525

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,160,816	-				+2.6
2,161,128	+				+0.5
2,161,240	+				+0.9
2,161,241	-				-0.1
2,161,706	+				+0.8
2,161,707	-				-0.5
2,161,795	+				-1.3
2,162,384	-		BPHYT_RS09525	0.52	+0.1
2,162,485	+		BPHYT_RS09525	0.60	+0.6
2,162,665	+		BPHYT_RS09525	0.74	+4.9
2,162,704	+		BPHYT_RS09525	0.77	+0.2
2,163,905	-		BPHYT_RS09535	0.11	-1.7
2,163,961	+		BPHYT_RS09535	0.28	+0.1
2,163,961	+		BPHYT_RS09535	0.28	-0.1
2,163,962	-		BPHYT_RS09535	0.29	+0.2