Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08465

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,935,492	+				-0.9
1,935,492	+				-0.2
1,935,493	-				+0.1
1,935,493	-				+0.3
1,935,569	+				+0.2
1,935,585	+				+0.1
1,935,585	+				+1.0
1,935,633	-				-1.7
1,935,633	-				-0.6
1,935,662	-				-0.6
1,935,687	+				-0.7
1,936,434	+				-0.5
1,937,271	-				+0.7
1,937,284	-				-2.2
1,937,284	-				-0.4
1,937,584	+				+0.5
1,937,584	+				+0.5
1,937,584	+				+1.0
1,937,585	-				-0.7
1,937,759	-		BPHYT_RS08470	0.11	+0.6
1,937,834	+		BPHYT_RS08470	0.17	+0.1
1,937,883	-		BPHYT_RS08470	0.21	+0.1
1,937,894	-		BPHYT_RS08470	0.22	+0.3
1,937,897	-		BPHYT_RS08470	0.22	+0.2
1,937,950	+		BPHYT_RS08470	0.26	-1.4