Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08455

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,932,039	+				+0.5
1,932,313	-				-1.0
1,932,433	-				-0.5
1,932,433	-				-0.2
1,932,433	-				-0.6
1,932,503	+				+0.1
1,932,674	-				+1.8
1,932,725	+				-0.5
1,932,725	+				+0.1
1,932,726	-				+0.8
1,932,760	+				+0.3
1,932,760	+				-1.2
1,932,761	-				+0.3
1,932,775	+				-0.3
1,932,912	-				-1.7
1,933,369	+		BPHYT_RS08455	0.17	-0.9
1,933,369	+		BPHYT_RS08455	0.17	-0.5
1,933,797	-		BPHYT_RS08455	0.34	-0.7
1,933,868	+		BPHYT_RS08455	0.37	-1.4
1,933,869	-		BPHYT_RS08455	0.37	+0.7
1,933,925	+		BPHYT_RS08455	0.39	+0.4
1,933,925	+		BPHYT_RS08455	0.39	-2.6
1,934,058	-		BPHYT_RS08455	0.44	+0.3
1,934,066	+		BPHYT_RS08455	0.44	-2.9
1,934,067	-		BPHYT_RS08455	0.45	-0.1
1,934,103	-		BPHYT_RS08455	0.46	+1.0
1,934,198	+		BPHYT_RS08455	0.50	-2.8
1,934,198	+		BPHYT_RS08455	0.50	-2.3
1,934,198	+		BPHYT_RS08455	0.50	+0.0
1,934,261	+		BPHYT_RS08455	0.52	-1.5
1,934,261	+		BPHYT_RS08455	0.52	-0.3
1,934,261	+		BPHYT_RS08455	0.52	-2.7
1,934,261	+		BPHYT_RS08455	0.52	-1.8
1,934,262	-		BPHYT_RS08455	0.52	+1.1
1,934,637	-		BPHYT_RS08455	0.67	-1.0
1,934,645	+		BPHYT_RS08455	0.68	-2.0
1,934,646	-		BPHYT_RS08455	0.68	+0.5
1,934,729	+		BPHYT_RS08455	0.71	-1.4
1,934,933	+		BPHYT_RS08455	0.79	-0.3
1,934,963	+		BPHYT_RS08455	0.80	-2.2
1,935,065	+		BPHYT_RS08455	0.84	-1.5
1,935,492	+				-0.9
1,935,492	+				-0.2
1,935,493	-				+0.1
1,935,493	-				+0.3
1,935,569	+				+0.2
1,935,585	+				+0.1
1,935,585	+				+1.0
1,935,633	-				-1.7
1,935,633	-				-0.6
1,935,662	-				-0.6
1,935,687	+				-0.7
1,936,434	+				-0.5