Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08405 and BPHYT_RS08410 are separated by 156 nucleotides BPHYT_RS08410 and BPHYT_RS08415 are separated by 30 nucleotides BPHYT_RS08415 and BPHYT_RS08420 are separated by 136 nucleotides
BPHYT_RS08405: BPHYT_RS08405 - hypothetical protein, at 1,927,201 to 1,927,551
_RS08405
BPHYT_RS08410: BPHYT_RS08410 - dehydrogenase, at 1,927,708 to 1,928,649
_RS08410
BPHYT_RS08415: BPHYT_RS08415 - hypothetical protein, at 1,928,680 to 1,929,063
_RS08415
BPHYT_RS08420: BPHYT_RS08420 - histidine kinase, at 1,929,200 to 1,929,637
_RS08420
Position (kb) 1927
1928
1929 Strain fitness (log2 ratio) -1
0
1 at 1926.752 kb on - strand at 1927.046 kb on + strand at 1927.148 kb on + strand at 1927.149 kb on - strand at 1927.488 kb on + strand, within BPHYT_RS08405 at 1928.065 kb on - strand, within BPHYT_RS08410 at 1928.593 kb on + strand at 1928.628 kb on + strand at 1928.898 kb on + strand, within BPHYT_RS08415 at 1928.929 kb on + strand, within BPHYT_RS08415 at 1928.948 kb on - strand, within BPHYT_RS08415 at 1929.294 kb on - strand, within BPHYT_RS08420
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,926,752 - -0.2 1,927,046 + +0.1 1,927,148 + -1.0 1,927,149 - -1.5 1,927,488 + BPHYT_RS08405 0.82 -0.2 1,928,065 - BPHYT_RS08410 0.38 +1.1 1,928,593 + +0.1 1,928,628 + +0.0 1,928,898 + BPHYT_RS08415 0.57 +1.2 1,928,929 + BPHYT_RS08415 0.65 -0.3 1,928,948 - BPHYT_RS08415 0.70 -0.2 1,929,294 - BPHYT_RS08420 0.21 +0.6
Or see this region's nucleotide sequence