Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08270 and BPHYT_RS08275 are separated by 135 nucleotides BPHYT_RS08275 and BPHYT_RS08280 are separated by 159 nucleotides
BPHYT_RS08270: BPHYT_RS08270 - long-chain fatty acid--CoA ligase, at 1,888,223 to 1,890,028
_RS08270
BPHYT_RS08275: BPHYT_RS08275 - acetyl-CoA acetyltransferase, at 1,890,164 to 1,891,465
_RS08275
BPHYT_RS08280: BPHYT_RS08280 - acyl dehydratase, at 1,891,625 to 1,892,569
_RS08280
Position (kb) 1890
1891
1892 Strain fitness (log2 ratio) -1
0
1 at 1889.280 kb on + strand, within BPHYT_RS08270 at 1889.603 kb on - strand, within BPHYT_RS08270 at 1889.604 kb on + strand, within BPHYT_RS08270 at 1889.677 kb on + strand, within BPHYT_RS08270 at 1889.678 kb on - strand, within BPHYT_RS08270 at 1889.733 kb on + strand, within BPHYT_RS08270 at 1889.772 kb on + strand, within BPHYT_RS08270 at 1889.772 kb on + strand, within BPHYT_RS08270 at 1889.773 kb on - strand, within BPHYT_RS08270 at 1890.341 kb on + strand, within BPHYT_RS08275 at 1890.400 kb on - strand, within BPHYT_RS08275 at 1890.400 kb on - strand, within BPHYT_RS08275 at 1890.590 kb on + strand, within BPHYT_RS08275 at 1890.590 kb on + strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.591 kb on - strand, within BPHYT_RS08275 at 1890.856 kb on - strand, within BPHYT_RS08275 at 1891.200 kb on + strand, within BPHYT_RS08275 at 1891.201 kb on - strand, within BPHYT_RS08275 at 1891.324 kb on - strand, within BPHYT_RS08275 at 1891.498 kb on - strand at 1892.289 kb on + strand, within BPHYT_RS08280 at 1892.405 kb on + strand, within BPHYT_RS08280 at 1892.405 kb on + strand, within BPHYT_RS08280 at 1892.455 kb on - strand, within BPHYT_RS08280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,889,280 + BPHYT_RS08270 0.59 +0.9 1,889,603 - BPHYT_RS08270 0.76 -0.1 1,889,604 + BPHYT_RS08270 0.76 +1.5 1,889,677 + BPHYT_RS08270 0.81 +0.7 1,889,678 - BPHYT_RS08270 0.81 -0.1 1,889,733 + BPHYT_RS08270 0.84 -0.9 1,889,772 + BPHYT_RS08270 0.86 -0.8 1,889,772 + BPHYT_RS08270 0.86 +1.1 1,889,773 - BPHYT_RS08270 0.86 +0.7 1,890,341 + BPHYT_RS08275 0.14 +0.4 1,890,400 - BPHYT_RS08275 0.18 -0.0 1,890,400 - BPHYT_RS08275 0.18 -0.3 1,890,590 + BPHYT_RS08275 0.33 -0.1 1,890,590 + BPHYT_RS08275 0.33 -0.2 1,890,591 - BPHYT_RS08275 0.33 +0.9 1,890,591 - BPHYT_RS08275 0.33 -0.3 1,890,591 - BPHYT_RS08275 0.33 +0.6 1,890,856 - BPHYT_RS08275 0.53 -0.3 1,891,200 + BPHYT_RS08275 0.80 +1.3 1,891,201 - BPHYT_RS08275 0.80 +0.5 1,891,324 - BPHYT_RS08275 0.89 -0.1 1,891,498 - +0.3 1,892,289 + BPHYT_RS08280 0.70 -0.6 1,892,405 + BPHYT_RS08280 0.83 +0.1 1,892,405 + BPHYT_RS08280 0.83 -0.7 1,892,455 - BPHYT_RS08280 0.88 +0.1
Or see this region's nucleotide sequence