Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08235

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,880,570	+				-0.0
1,880,595	-				-0.1
1,880,595	-				+0.2
1,880,946	+				+0.2
1,881,037	+				-1.2
1,881,903	-		BPHYT_RS08235	0.85	+0.0
1,882,020	-				-0.6
1,882,066	-				-0.3
1,882,085	+				-1.0
1,882,085	+				+1.6
1,882,085	+				+0.8
1,882,085	+				+1.2
1,882,086	-				-0.2
1,882,086	-				+0.8
1,882,086	-				+0.3
1,882,086	-				-0.5
1,882,086	-				-0.8
1,882,086	-				+0.3
1,882,096	+				+0.2
1,882,242	+				+0.4
1,882,336	-				-1.6
1,882,336	-				-0.6
1,882,396	-				+0.7
1,882,729	+		BPHYT_RS08240	0.36	-0.4
1,882,729	+		BPHYT_RS08240	0.36	+3.0
1,882,729	+		BPHYT_RS08240	0.36	+0.9
1,882,730	-		BPHYT_RS08240	0.36	-0.3
1,882,856	-		BPHYT_RS08240	0.60	-0.4
1,882,856	-		BPHYT_RS08240	0.60	-0.9