Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08075

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,842,755	+				-1.8
1,842,755	+				+0.5
1,843,412	-				-0.2
1,843,412	-				-0.3
1,843,421	-				-2.6
1,843,554	+		BPHYT_RS08080	0.12	-0.4
1,843,667	+		BPHYT_RS08080	0.24	-0.6
1,843,751	-		BPHYT_RS08080	0.33	-0.4
1,843,824	+		BPHYT_RS08080	0.41	-1.6
1,843,825	-		BPHYT_RS08080	0.41	-1.1
1,843,857	+		BPHYT_RS08080	0.45	-0.7
1,843,951	+		BPHYT_RS08080	0.55	-0.8
1,843,983	+		BPHYT_RS08080	0.58	-0.8
1,843,983	+		BPHYT_RS08080	0.58	-1.0
1,843,983	+		BPHYT_RS08080	0.58	-1.2
1,843,984	-		BPHYT_RS08080	0.58	-1.2
1,843,984	-		BPHYT_RS08080	0.58	-0.9
1,843,984	-		BPHYT_RS08080	0.58	-0.6
1,843,984	-		BPHYT_RS08080	0.58	-0.5
1,843,984	-		BPHYT_RS08080	0.58	-0.9
1,843,984	-		BPHYT_RS08080	0.58	-0.9