Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08060

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,837,291	-				-0.3
1,837,370	+				-1.2
1,837,371	-				-0.0
1,837,384	-				-0.4
1,837,768	+				-0.5
1,837,768	+				+1.0
1,837,768	+				-0.2
1,837,869	+		BPHYT_RS08060	0.19	+0.4
1,837,869	+		BPHYT_RS08060	0.19	-0.5
1,837,869	+		BPHYT_RS08060	0.19	-0.7
1,837,869	+		BPHYT_RS08060	0.19	-1.1
1,837,869	+		BPHYT_RS08060	0.19	-1.2
1,837,873	+		BPHYT_RS08060	0.20	-0.9
1,837,873	+		BPHYT_RS08060	0.20	-0.7
1,837,963	+		BPHYT_RS08060	0.40	+0.2