Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07960

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,810,664	-		BPHYT_RS07950	0.84	+1.2
1,810,664	-		BPHYT_RS07950	0.84	-0.0
1,810,817	+				-1.4
1,810,817	+				-3.1
1,810,818	-				+0.8
1,810,818	-				+0.7
1,810,822	-				+0.3
1,810,822	-				+0.6
1,810,853	-				-0.2
1,810,892	-				-0.8
1,810,893	+				+1.9
1,811,339	-				-0.6
1,811,377	+				+0.3
1,811,378	-				-0.9
1,811,673	+		BPHYT_RS07960	0.43	-1.5
1,811,675	+		BPHYT_RS07960	0.44	-0.3
1,811,791	-				+0.1
1,812,088	-		BPHYT_RS07965	0.10	-1.3
1,812,692	-		BPHYT_RS07965	0.34	-0.5