Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07490

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,702,018	+				-0.8
1,702,019	-				-0.7
1,702,253	-		BPHYT_RS07485	0.66	-0.5
1,702,576	+				-0.9
1,702,578	+				-0.2
1,702,614	+				+0.2
1,702,614	+				-0.5
1,702,615	-				+0.2
1,702,831	-		BPHYT_RS07490	0.17	-1.3
1,703,326	+		BPHYT_RS07490	0.51	+0.3
1,703,555	-		BPHYT_RS07490	0.67	+1.1
1,703,770	-		BPHYT_RS07490	0.82	+0.5
1,703,895	+				-0.3
1,703,914	-				-1.3
1,704,053	+				+0.2