Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06890

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,559,198	+		BPHYT_RS06885	0.27	-1.3
1,559,198	+		BPHYT_RS06885	0.27	-0.2
1,559,199	-		BPHYT_RS06885	0.27	+0.8
1,559,283	+		BPHYT_RS06885	0.36	-0.8
1,559,300	-		BPHYT_RS06885	0.38	-0.4
1,559,322	-		BPHYT_RS06885	0.40	-0.9
1,559,322	-		BPHYT_RS06885	0.40	-0.2
1,559,322	-		BPHYT_RS06885	0.40	-1.6
1,559,357	+		BPHYT_RS06885	0.44	-0.6
1,559,357	+		BPHYT_RS06885	0.44	-0.7
1,559,357	+		BPHYT_RS06885	0.44	+0.4
1,559,358	-		BPHYT_RS06885	0.44	+0.6
1,559,456	+		BPHYT_RS06885	0.54	+0.6
1,559,555	+		BPHYT_RS06885	0.64	-0.6
1,559,556	-		BPHYT_RS06885	0.64	-0.4
1,559,603	+		BPHYT_RS06885	0.69	+0.7
1,559,603	+		BPHYT_RS06885	0.69	+0.6
1,559,603	+		BPHYT_RS06885	0.69	+0.4
1,559,604	-		BPHYT_RS06885	0.69	+0.5
1,559,675	+		BPHYT_RS06885	0.76	-0.5
1,559,675	+		BPHYT_RS06885	0.76	+0.4
1,559,676	-		BPHYT_RS06885	0.76	-0.6
1,559,676	-		BPHYT_RS06885	0.76	-0.0
1,559,745	-		BPHYT_RS06885	0.84	-0.8
1,559,745	-		BPHYT_RS06885	0.84	-0.2
1,559,834	+				+0.4
1,559,964	+				+0.1
1,560,014	+				+0.2
1,560,014	+				+0.3
1,560,015	-				+1.1
1,560,015	-				-0.1
1,560,054	+				+2.4
1,560,054	+				-1.2
1,560,526	+		BPHYT_RS06890	0.50	-0.3
1,560,526	+		BPHYT_RS06890	0.50	-0.1
1,560,526	+		BPHYT_RS06890	0.50	-0.3
1,560,526	+		BPHYT_RS06890	0.50	-0.6
1,560,526	+		BPHYT_RS06890	0.50	-0.1
1,560,526	+		BPHYT_RS06890	0.50	-0.4
1,560,527	-		BPHYT_RS06890	0.50	+1.8
1,560,527	-		BPHYT_RS06890	0.50	-0.7
1,560,556	+		BPHYT_RS06890	0.54	+0.6
1,560,604	+		BPHYT_RS06890	0.60	-1.0
1,560,605	-		BPHYT_RS06890	0.60	-1.0
1,560,605	-		BPHYT_RS06890	0.60	+0.2
1,560,605	-		BPHYT_RS06890	0.60	-1.7
1,560,894	+				+2.2
1,560,895	-				-0.4
1,560,895	-				+0.6
1,560,913	+				-0.1
1,560,914	-				+0.8
1,560,914	-				-0.7
1,560,923	-				+0.9
1,561,049	+				+0.4
1,561,124	+		BPHYT_RS06895	0.15	+0.3
1,561,124	+		BPHYT_RS06895	0.15	+0.7
1,561,125	-		BPHYT_RS06895	0.15	+0.3
1,561,321	-		BPHYT_RS06895	0.31	-2.5
1,561,442	+		BPHYT_RS06895	0.41	+0.3
1,561,442	+		BPHYT_RS06895	0.41	-1.2
1,561,443	-		BPHYT_RS06895	0.41	+0.5
1,561,443	-		BPHYT_RS06895	0.41	-1.5
1,561,445	+		BPHYT_RS06895	0.41	-0.8
1,561,579	+		BPHYT_RS06895	0.52	-0.6
1,561,580	-		BPHYT_RS06895	0.52	+0.7
1,561,580	-		BPHYT_RS06895	0.52	-0.2
1,561,580	-		BPHYT_RS06895	0.52	-0.6
1,561,658	+		BPHYT_RS06895	0.58	+0.1
1,561,658	+		BPHYT_RS06895	0.58	-0.1
1,561,661	+		BPHYT_RS06895	0.59	+0.4
1,561,661	+		BPHYT_RS06895	0.59	+1.8
1,561,697	+		BPHYT_RS06895	0.62	-2.1
1,561,697	+		BPHYT_RS06895	0.62	-0.4
1,561,698	-		BPHYT_RS06895	0.62	+0.0
1,561,698	-		BPHYT_RS06895	0.62	-0.4