Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06815

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,540,573	-		BPHYT_RS06810	0.55	-1.2
1,540,757	-		BPHYT_RS06810	0.72	+0.3
1,540,860	+		BPHYT_RS06810	0.81	+0.7
1,540,861	-		BPHYT_RS06810	0.81	+0.1
1,540,889	+		BPHYT_RS06810	0.83	-1.4
1,540,889	+		BPHYT_RS06810	0.83	-1.1
1,540,889	+		BPHYT_RS06810	0.83	-1.2
1,540,889	+		BPHYT_RS06810	0.83	-1.9
1,540,890	-		BPHYT_RS06810	0.84	-0.6
1,540,890	-		BPHYT_RS06810	0.84	-0.9
1,540,893	+		BPHYT_RS06810	0.84	-0.3
1,540,893	+		BPHYT_RS06810	0.84	+0.1
1,540,963	+				-0.7
1,540,963	+				+0.2
1,540,964	-				+0.1
1,540,964	-				+0.8
1,540,964	-				+0.2
1,540,965	+				-0.0
1,540,965	+				+0.4
1,540,965	+				+1.3
1,540,965	+				+1.2
1,540,965	+				-0.6
1,540,965	+				+0.5
1,540,966	-				+0.7
1,540,966	-				+3.2
1,540,966	-				-0.6
1,541,075	+				+2.2
1,541,076	-				+1.1