Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06415 and BPHYT_RS06420 are separated by 363 nucleotides BPHYT_RS06420 and BPHYT_RS06425 are separated by 63 nucleotides BPHYT_RS06425 and BPHYT_RS06430 are separated by 49 nucleotides
BPHYT_RS06415: BPHYT_RS06415 - uracil phosphoribosyltransferase, at 1,460,245 to 1,460,895
_RS06415
BPHYT_RS06420: BPHYT_RS06420 - oxidoreductase, at 1,461,259 to 1,462,038
_RS06420
BPHYT_RS06425: BPHYT_RS06425 - methylglyoxal synthase, at 1,462,102 to 1,462,491
_RS06425
BPHYT_RS06430: BPHYT_RS06430 - quinone oxidoreductase, at 1,462,541 to 1,463,515
_RS06430
Position (kb) 1461
1462
1463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1460.300 kb on + strand at 1460.300 kb on + strand at 1460.300 kb on + strand at 1460.300 kb on + strand at 1460.301 kb on - strand at 1460.301 kb on - strand at 1460.301 kb on - strand at 1460.301 kb on - strand at 1460.339 kb on + strand, within BPHYT_RS06415 at 1460.540 kb on + strand, within BPHYT_RS06415 at 1460.754 kb on - strand, within BPHYT_RS06415 at 1460.824 kb on - strand, within BPHYT_RS06415 at 1460.918 kb on - strand at 1460.988 kb on + strand at 1461.190 kb on + strand at 1461.200 kb on - strand at 1461.982 kb on + strand at 1461.983 kb on - strand at 1461.983 kb on - strand at 1462.096 kb on + strand at 1462.096 kb on + strand at 1462.097 kb on - strand at 1462.097 kb on - strand at 1462.137 kb on + strand at 1462.150 kb on - strand, within BPHYT_RS06425 at 1462.664 kb on + strand, within BPHYT_RS06430 at 1462.664 kb on + strand, within BPHYT_RS06430 at 1462.664 kb on + strand, within BPHYT_RS06430 at 1462.665 kb on - strand, within BPHYT_RS06430 at 1462.665 kb on - strand, within BPHYT_RS06430 at 1462.665 kb on - strand, within BPHYT_RS06430 at 1462.677 kb on - strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.925 kb on + strand, within BPHYT_RS06430 at 1462.926 kb on - strand, within BPHYT_RS06430 at 1462.944 kb on - strand, within BPHYT_RS06430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,460,300 + +0.2 1,460,300 + -0.1 1,460,300 + +0.1 1,460,300 + -0.4 1,460,301 - +0.6 1,460,301 - +1.1 1,460,301 - +0.0 1,460,301 - -0.1 1,460,339 + BPHYT_RS06415 0.14 -0.5 1,460,540 + BPHYT_RS06415 0.45 -0.8 1,460,754 - BPHYT_RS06415 0.78 -2.5 1,460,824 - BPHYT_RS06415 0.89 +0.0 1,460,918 - -1.1 1,460,988 + -0.9 1,461,190 + +3.1 1,461,200 - -0.8 1,461,982 + -1.0 1,461,983 - -0.2 1,461,983 - +1.3 1,462,096 + -1.1 1,462,096 + -0.3 1,462,097 - -0.9 1,462,097 - +0.3 1,462,137 + -2.0 1,462,150 - BPHYT_RS06425 0.12 -0.1 1,462,664 + BPHYT_RS06430 0.13 -0.4 1,462,664 + BPHYT_RS06430 0.13 +0.1 1,462,664 + BPHYT_RS06430 0.13 +0.2 1,462,665 - BPHYT_RS06430 0.13 -0.2 1,462,665 - BPHYT_RS06430 0.13 -0.6 1,462,665 - BPHYT_RS06430 0.13 +0.1 1,462,677 - BPHYT_RS06430 0.14 +0.0 1,462,925 + BPHYT_RS06430 0.39 -1.5 1,462,925 + BPHYT_RS06430 0.39 -0.4 1,462,925 + BPHYT_RS06430 0.39 -2.9 1,462,925 + BPHYT_RS06430 0.39 -0.6 1,462,926 - BPHYT_RS06430 0.39 +0.2 1,462,944 - BPHYT_RS06430 0.41 +0.7
Or see this region's nucleotide sequence