Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06405

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,456,630	-		BPHYT_RS06400	0.43	-2.8
1,456,674	+		BPHYT_RS06400	0.48	-2.9
1,456,819	+		BPHYT_RS06400	0.63	-5.1
1,456,820	-		BPHYT_RS06400	0.63	-0.8
1,456,820	-		BPHYT_RS06400	0.63	-1.3
1,456,820	-		BPHYT_RS06400	0.63	-4.8
1,457,005	-		BPHYT_RS06400	0.83	+1.4
1,457,260	+				-3.3
1,457,261	-				+0.1
1,457,397	+				-6.1
1,457,398	-				-0.3
1,457,398	-				+0.4
1,457,770	-		BPHYT_RS06405	0.22	-2.0
1,457,775	+		BPHYT_RS06405	0.22	-3.3
1,457,775	+		BPHYT_RS06405	0.22	-2.3
1,457,872	-		BPHYT_RS06405	0.30	-2.0
1,457,929	+		BPHYT_RS06405	0.34	-1.5
1,457,930	-		BPHYT_RS06405	0.34	-1.1
1,458,024	-		BPHYT_RS06405	0.41	-1.4
1,458,029	-		BPHYT_RS06405	0.42	+0.1
1,458,390	+		BPHYT_RS06405	0.70	-2.3
1,458,391	-		BPHYT_RS06405	0.70	+0.4
1,458,427	-		BPHYT_RS06405	0.72	-0.4
1,458,699	+				-1.7
1,458,700	-				-4.1
1,458,700	-				-2.6
1,458,776	+				+0.4
1,458,776	+				-0.2
1,458,801	+				-2.8
1,458,810	+				+1.4
1,459,058	+				-1.1
1,459,059	-				-1.5
1,459,493	-		BPHYT_RS06410	0.63	+0.2
1,459,516	+		BPHYT_RS06410	0.66	-1.7
1,459,569	-		BPHYT_RS06410	0.74	-1.7
1,459,725	-				-0.0
1,459,764	+				-1.8