Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06385

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,453,461	+				-0.4
1,453,522	+				-0.1
1,453,531	-		BPHYT_RS06380	0.11	-0.3
1,453,531	-		BPHYT_RS06380	0.11	+0.6
1,453,543	+		BPHYT_RS06380	0.13	+3.1
1,453,543	+		BPHYT_RS06380	0.13	-0.3
1,453,581	+		BPHYT_RS06380	0.19	-0.3
1,453,825	+		BPHYT_RS06380	0.58	-1.1
1,453,918	-		BPHYT_RS06380	0.73	-0.1
1,454,053	-				-0.1
1,454,218	+				+0.1
1,454,274	-				+2.1
1,454,313	+				-0.0
1,454,313	+				+0.0
1,454,314	-				+1.0
1,454,472	+				-0.7
1,454,862	+		BPHYT_RS06385	0.86	+2.5
1,454,862	+		BPHYT_RS06385	0.86	+0.1
1,454,863	-		BPHYT_RS06385	0.86	+0.3
1,454,918	-				+0.7
1,455,005	+				+0.3
1,455,005	+				-0.8
1,455,005	+				-1.2
1,455,005	+				-0.6
1,455,006	-				-0.7
1,455,006	-				-1.7
1,455,176	+		BPHYT_RS06390	0.37	-2.5
1,455,176	+		BPHYT_RS06390	0.37	-0.7
1,455,177	-		BPHYT_RS06390	0.37	+0.1
1,455,177	-		BPHYT_RS06390	0.37	+2.2