Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06335

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,443,591	-		BPHYT_RS06330	0.45	-0.9
1,443,607	+		BPHYT_RS06330	0.46	+0.1
1,443,607	+		BPHYT_RS06330	0.46	-0.5
1,443,608	-		BPHYT_RS06330	0.47	-1.2
1,443,750	+		BPHYT_RS06330	0.59	-0.2
1,443,861	-		BPHYT_RS06330	0.69	+1.2
1,443,875	+		BPHYT_RS06330	0.71	+0.4
1,443,876	-		BPHYT_RS06330	0.71	-1.7
1,443,885	-		BPHYT_RS06330	0.72	+0.3
1,444,147	+				-2.3
1,444,208	+				+0.1
1,444,209	-				+0.1
1,444,209	-				-0.9
1,444,209	-				+0.3
1,444,209	-				-0.5
1,444,288	+				-0.0
1,444,345	-		BPHYT_RS06335	0.14	+1.2
1,444,715	-				-0.1
1,444,715	-				+2.4
1,444,938	+				+0.7
1,444,944	+				+1.0
1,445,017	+				-0.8
1,445,036	-				+0.1
1,445,158	+				+2.1
1,445,231	-				+7.8
1,445,232	+				-0.1
1,445,232	+				+0.8
1,445,232	+				+1.4
1,445,264	-				+4.4
1,445,280	+				-1.9
1,445,287	+				+0.4
1,445,395	+				-1.6
1,445,396	-				+1.4
1,445,396	-				+0.2
1,445,396	-				+2.1
1,445,470	+		BPHYT_RS06340	0.13	-0.7
1,445,470	+		BPHYT_RS06340	0.13	-0.9
1,445,470	+		BPHYT_RS06340	0.13	-0.0