Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06215

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,416,858	+		BPHYT_RS06205	0.60	+0.1
1,416,858	+		BPHYT_RS06205	0.60	-2.5
1,416,858	+		BPHYT_RS06205	0.60	+0.4
1,416,859	-		BPHYT_RS06205	0.60	+0.5
1,416,859	-		BPHYT_RS06205	0.60	-1.7
1,416,859	-		BPHYT_RS06205	0.60	+0.1
1,416,864	+		BPHYT_RS06205	0.62	+0.3
1,417,065	-				+0.4
1,417,159	+		BPHYT_RS06210	0.16	+0.9
1,417,465	-		BPHYT_RS06210	0.72	+0.4
1,417,584	-				-0.0
1,417,584	-				+0.4
1,417,763	-				-0.8
1,417,796	-				+0.4
1,417,805	+				-2.0
1,417,806	-				+0.3
1,417,806	-				-0.1
1,417,826	+				-0.2
1,417,827	-				+1.0
1,418,003	+		BPHYT_RS06215	0.17	+0.6
1,418,003	+		BPHYT_RS06215	0.17	+2.6
1,418,766	-				+1.5
1,418,848	+				-0.1
1,418,848	+				+0.8
1,418,849	-				+2.6
1,418,849	-				-0.2
1,418,921	-				-1.5
1,419,048	-				-0.6
1,419,115	-				-0.6
1,419,242	+		BPHYT_RS06220	0.16	-0.3
1,419,470	+		BPHYT_RS06220	0.33	-0.5
1,419,471	-		BPHYT_RS06220	0.33	-1.1
1,419,471	-		BPHYT_RS06220	0.33	+0.8
1,419,489	-		BPHYT_RS06220	0.34	-1.7
1,419,489	-		BPHYT_RS06220	0.34	-0.4
1,419,761	+		BPHYT_RS06220	0.53	+1.4
1,419,762	-		BPHYT_RS06220	0.53	-0.5
1,419,764	-		BPHYT_RS06220	0.53	-2.1