Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04955

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,138,680	-		BPHYT_RS04950	0.81	-0.7
1,138,935	+				+3.0
1,138,935	+		BPHYT_RS04950	0.87	-0.2
1,139,015	+		BPHYT_RS04950	0.89	-0.6
1,139,015	+		BPHYT_RS04950	0.89	-1.1
1,139,015	+		BPHYT_RS04950	0.89	-0.3
1,139,016	-		BPHYT_RS04950	0.89	-0.5
1,139,849	-		BPHYT_RS04955	0.11	-5.3
1,141,782	+				-0.0
1,141,885	-				+0.4
1,141,888	-				-0.2
1,141,946	+				+0.9
1,142,061	-				+0.8
1,142,259	+		BPHYT_RS04960	0.24	+0.1
1,142,304	+		BPHYT_RS04960	0.30	+0.8
1,142,304	+		BPHYT_RS04960	0.30	-0.6
1,142,323	+		BPHYT_RS04960	0.33	+0.4
1,142,324	-		BPHYT_RS04960	0.33	-0.3
1,142,421	+		BPHYT_RS04960	0.48	+0.1
1,142,421	+		BPHYT_RS04960	0.48	+0.1
1,142,551	-		BPHYT_RS04960	0.68	+0.5