Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04855 and BPHYT_RS04860 overlap by 1 nucleotides BPHYT_RS04860 and BPHYT_RS04865 are separated by 46 nucleotides BPHYT_RS04865 and BPHYT_RS04870 are separated by 42 nucleotides BPHYT_RS04870 and BPHYT_RS04875 overlap by 16 nucleotides
BPHYT_RS04855: BPHYT_RS04855 - iron ABC transporter, at 1,118,514 to 1,119,566
_RS04855
BPHYT_RS04860: BPHYT_RS04860 - ABC transporter ATP-binding protein, at 1,119,566 to 1,120,408
_RS04860
BPHYT_RS04865: BPHYT_RS04865 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,120,455 to 1,121,516
_RS04865
BPHYT_RS04870: BPHYT_RS04870 - cobalamin synthase, at 1,121,559 to 1,122,335
_RS04870
BPHYT_RS04875: BPHYT_RS04875 - alpha-ribazole phosphatase, at 1,122,320 to 1,122,910
_RS04875
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1119.664 kb on + strand, within BPHYT_RS04860 at 1119.664 kb on + strand, within BPHYT_RS04860 at 1119.672 kb on - strand, within BPHYT_RS04860 at 1120.165 kb on + strand, within BPHYT_RS04860 at 1120.282 kb on + strand at 1120.542 kb on - strand at 1121.208 kb on + strand, within BPHYT_RS04865 at 1121.209 kb on - strand, within BPHYT_RS04865 at 1121.310 kb on + strand, within BPHYT_RS04865 at 1121.311 kb on - strand, within BPHYT_RS04865 at 1121.652 kb on + strand, within BPHYT_RS04870 at 1121.692 kb on + strand, within BPHYT_RS04870 at 1121.721 kb on + strand, within BPHYT_RS04870 at 1121.722 kb on - strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1121.850 kb on + strand, within BPHYT_RS04870 at 1122.027 kb on + strand, within BPHYT_RS04870 at 1122.028 kb on - strand, within BPHYT_RS04870 at 1122.035 kb on + strand, within BPHYT_RS04870 at 1122.206 kb on - strand, within BPHYT_RS04870 at 1122.229 kb on - strand, within BPHYT_RS04870 at 1122.252 kb on + strand, within BPHYT_RS04870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,119,664 + BPHYT_RS04860 0.12 -1.1 1,119,664 + BPHYT_RS04860 0.12 +0.1 1,119,672 - BPHYT_RS04860 0.13 -2.0 1,120,165 + BPHYT_RS04860 0.71 -1.0 1,120,282 + +1.7 1,120,542 - +0.2 1,121,208 + BPHYT_RS04865 0.71 +2.1 1,121,209 - BPHYT_RS04865 0.71 -0.1 1,121,310 + BPHYT_RS04865 0.81 +1.0 1,121,311 - BPHYT_RS04865 0.81 +0.8 1,121,652 + BPHYT_RS04870 0.12 -0.2 1,121,692 + BPHYT_RS04870 0.17 -0.4 1,121,721 + BPHYT_RS04870 0.21 +0.0 1,121,722 - BPHYT_RS04870 0.21 +0.3 1,121,850 + BPHYT_RS04870 0.37 -3.1 1,121,850 + BPHYT_RS04870 0.37 -0.9 1,122,027 + BPHYT_RS04870 0.60 +0.5 1,122,028 - BPHYT_RS04870 0.60 -0.4 1,122,035 + BPHYT_RS04870 0.61 +0.7 1,122,206 - BPHYT_RS04870 0.83 -0.0 1,122,229 - BPHYT_RS04870 0.86 -0.9 1,122,252 + BPHYT_RS04870 0.89 -0.0
Or see this region's nucleotide sequence