Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04690

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,083,777	+		BPHYT_RS04685	0.39	-0.4
1,083,777	+		BPHYT_RS04685	0.39	-0.0
1,083,778	-		BPHYT_RS04685	0.39	-0.6
1,083,778	-		BPHYT_RS04685	0.39	+0.1
1,084,192	-		BPHYT_RS04685	0.67	+0.7
1,084,419	+		BPHYT_RS04685	0.82	+1.2
1,084,420	-		BPHYT_RS04685	0.82	+0.5
1,084,420	-		BPHYT_RS04685	0.82	-0.2
1,084,497	+		BPHYT_RS04685	0.88	+0.2
1,084,726	+				-0.0
1,084,726	+				-0.3
1,085,200	+		BPHYT_RS04690	0.53	-1.2
1,085,204	-		BPHYT_RS04690	0.53	+0.7
1,085,338	+		BPHYT_RS04690	0.67	-1.9
1,085,377	+		BPHYT_RS04690	0.70	+2.0
1,085,378	-		BPHYT_RS04690	0.71	-0.4
1,085,378	-		BPHYT_RS04690	0.71	-0.6
1,085,419	+		BPHYT_RS04690	0.75	+0.5
1,085,419	+		BPHYT_RS04690	0.75	+0.2
1,085,420	-		BPHYT_RS04690	0.75	-0.3
1,085,657	+				-2.5
1,086,115	+		BPHYT_RS04695	0.36	-0.8
1,086,166	+		BPHYT_RS04695	0.41	-2.1
1,086,166	+		BPHYT_RS04695	0.41	-0.8
1,086,301	-		BPHYT_RS04695	0.55	+0.5
1,086,394	+		BPHYT_RS04695	0.65	+0.1