Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04680

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,081,190	+				-2.4
1,081,190	+				+0.3
1,081,190	+				-1.7
1,081,191	-				+0.2
1,081,191	-				+0.1
1,081,191	-				-1.3
1,081,191	-				-0.5
1,081,365	-		BPHYT_RS04675	0.34	-0.4
1,081,527	-		BPHYT_RS04675	0.59	-0.9
1,081,670	+		BPHYT_RS04675	0.81	-1.9
1,081,809	+				-0.0
1,081,810	-				-0.6
1,081,923	-				-1.6
1,082,040	-				-0.6
1,082,040	-				+0.5
1,082,091	+				-0.2
1,082,470	+		BPHYT_RS04680	0.33	+1.3
1,082,471	-		BPHYT_RS04680	0.33	-0.2
1,082,521	+		BPHYT_RS04680	0.38	-0.2
1,082,681	-		BPHYT_RS04680	0.53	+0.6
1,082,762	-		BPHYT_RS04680	0.60	+0.4
1,082,762	-		BPHYT_RS04680	0.60	-0.6
1,082,768	-		BPHYT_RS04680	0.61	-0.7
1,082,768	-		BPHYT_RS04680	0.61	+0.4
1,082,864	-		BPHYT_RS04680	0.70	+1.4
1,083,291	+				+1.1
1,083,292	-				-0.2
1,083,292	-				+0.1
1,083,292	-				-0.5
1,083,495	+		BPHYT_RS04685	0.20	-0.2
1,083,495	+		BPHYT_RS04685	0.20	-1.1
1,083,496	-		BPHYT_RS04685	0.20	-0.3
1,083,496	-		BPHYT_RS04685	0.20	+0.6
1,083,777	+		BPHYT_RS04685	0.39	-0.4
1,083,777	+		BPHYT_RS04685	0.39	-0.0
1,083,778	-		BPHYT_RS04685	0.39	-0.6
1,083,778	-		BPHYT_RS04685	0.39	+0.1
1,084,192	-		BPHYT_RS04685	0.67	+0.7