Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04330 and BPHYT_RS04335 are separated by 53 nucleotides BPHYT_RS04335 and BPHYT_RS04340 overlap by 4 nucleotides
BPHYT_RS04330: BPHYT_RS04330 - hypothetical protein, at 997,214 to 998,356
_RS04330
BPHYT_RS04335: BPHYT_RS04335 - membrane protein, at 998,410 to 998,835
_RS04335
BPHYT_RS04340: BPHYT_RS04340 - hypothetical protein, at 998,832 to 1,000,115
_RS04340
Position (kb) 998
999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 997.446 kb on - strand, within BPHYT_RS04330 at 997.576 kb on + strand, within BPHYT_RS04330 at 997.576 kb on + strand, within BPHYT_RS04330 at 997.576 kb on + strand, within BPHYT_RS04330 at 998.117 kb on + strand, within BPHYT_RS04330 at 998.203 kb on + strand, within BPHYT_RS04330 at 998.203 kb on + strand, within BPHYT_RS04330 at 998.204 kb on - strand, within BPHYT_RS04330 at 998.215 kb on - strand, within BPHYT_RS04330 at 998.215 kb on - strand, within BPHYT_RS04330 at 998.528 kb on + strand, within BPHYT_RS04335 at 998.528 kb on + strand, within BPHYT_RS04335 at 998.529 kb on - strand, within BPHYT_RS04335 at 998.836 kb on - strand at 998.836 kb on - strand at 998.899 kb on + strand at 998.900 kb on - strand at 998.900 kb on - strand at 998.902 kb on + strand at 998.965 kb on + strand, within BPHYT_RS04340 at 999.212 kb on + strand, within BPHYT_RS04340 at 999.343 kb on + strand, within BPHYT_RS04340 at 999.494 kb on + strand, within BPHYT_RS04340 at 999.556 kb on + strand, within BPHYT_RS04340 at 999.557 kb on - strand, within BPHYT_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 997,446 - BPHYT_RS04330 0.20 +1.1 997,576 + BPHYT_RS04330 0.32 +1.2 997,576 + BPHYT_RS04330 0.32 +1.1 997,576 + BPHYT_RS04330 0.32 -0.0 998,117 + BPHYT_RS04330 0.79 -0.3 998,203 + BPHYT_RS04330 0.87 +1.1 998,203 + BPHYT_RS04330 0.87 +1.3 998,204 - BPHYT_RS04330 0.87 +1.5 998,215 - BPHYT_RS04330 0.88 -0.7 998,215 - BPHYT_RS04330 0.88 +1.0 998,528 + BPHYT_RS04335 0.28 -1.5 998,528 + BPHYT_RS04335 0.28 -1.6 998,529 - BPHYT_RS04335 0.28 +0.7 998,836 - -2.6 998,836 - +1.1 998,899 + +0.3 998,900 - +0.5 998,900 - -0.3 998,902 + -0.9 998,965 + BPHYT_RS04340 0.10 -0.0 999,212 + BPHYT_RS04340 0.30 -0.3 999,343 + BPHYT_RS04340 0.40 +1.8 999,494 + BPHYT_RS04340 0.52 -0.0 999,556 + BPHYT_RS04340 0.56 +0.0 999,557 - BPHYT_RS04340 0.56 -0.4
Or see this region's nucleotide sequence