Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04285 and BPHYT_RS04290 are separated by 327 nucleotides BPHYT_RS04290 and BPHYT_RS04295 are separated by 225 nucleotides
BPHYT_RS04285: BPHYT_RS04285 - rhamnosyltransferase, at 980,750 to 981,661
_RS04285
BPHYT_RS04290: BPHYT_RS04290 - glycosyl transferase family 2, at 981,989 to 983,914
_RS04290
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 981.138 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.468 kb on - strand, within BPHYT_RS04285 at 981.652 kb on + strand at 981.659 kb on + strand at 982.091 kb on + strand at 982.196 kb on + strand, within BPHYT_RS04290 at 982.587 kb on - strand, within BPHYT_RS04290 at 983.044 kb on + strand, within BPHYT_RS04290 at 983.714 kb on + strand, within BPHYT_RS04290 at 983.762 kb on + strand at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 981,138 - BPHYT_RS04285 0.43 +0.3 981,468 - BPHYT_RS04285 0.79 +2.6 981,468 - BPHYT_RS04285 0.79 +3.9 981,652 + -1.0 981,659 + +0.2 982,091 + +1.4 982,196 + BPHYT_RS04290 0.11 +1.6 982,587 - BPHYT_RS04290 0.31 +1.3 983,044 + BPHYT_RS04290 0.55 +2.1 983,714 + BPHYT_RS04290 0.90 +0.3 983,762 + +2.6 984,273 - BPHYT_RS04295 0.17 +0.5 984,286 + BPHYT_RS04295 0.19 +0.3 984,324 + BPHYT_RS04295 0.23 +0.0 984,371 + BPHYT_RS04295 0.29 +0.2 984,371 + BPHYT_RS04295 0.29 -0.1 984,371 + BPHYT_RS04295 0.29 -0.1 984,372 - BPHYT_RS04295 0.29 +0.7 984,372 - BPHYT_RS04295 0.29 +4.2 984,478 + BPHYT_RS04295 0.43 +0.5 984,478 + BPHYT_RS04295 0.43 +1.5 984,479 - BPHYT_RS04295 0.43 +0.8 984,623 + BPHYT_RS04295 0.61 -0.0 984,647 + BPHYT_RS04295 0.64 -0.5 984,698 + BPHYT_RS04295 0.71 +1.0 984,698 + BPHYT_RS04295 0.71 +0.3 984,699 - BPHYT_RS04295 0.71 +0.7 984,841 + BPHYT_RS04295 0.89 -1.2 984,841 + BPHYT_RS04295 0.89 -0.8
Or see this region's nucleotide sequence