Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04075 and BPHYT_RS04080 are separated by 177 nucleotides BPHYT_RS04080 and BPHYT_RS04085 are separated by 6 nucleotides BPHYT_RS04085 and BPHYT_RS04090 are separated by 89 nucleotides
BPHYT_RS04075: BPHYT_RS04075 - hypothetical protein, at 929,825 to 930,220
_RS04075
BPHYT_RS04080: BPHYT_RS04080 - chloride channel protein, at 930,398 to 932,188
_RS04080
BPHYT_RS04085: BPHYT_RS04085 - MarR family transcriptional regulator, at 932,195 to 932,608
_RS04085
BPHYT_RS04090: BPHYT_RS04090 - CBS domain containing membrane protein, at 932,698 to 933,813
_RS04090
Position (kb) 930
931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 929.483 kb on - strand at 929.506 kb on + strand at 929.507 kb on - strand at 929.587 kb on - strand at 929.682 kb on + strand at 929.963 kb on + strand, within BPHYT_RS04075 at 929.978 kb on + strand, within BPHYT_RS04075 at 929.979 kb on - strand, within BPHYT_RS04075 at 930.011 kb on + strand, within BPHYT_RS04075 at 930.012 kb on - strand, within BPHYT_RS04075 at 930.013 kb on + strand, within BPHYT_RS04075 at 930.650 kb on + strand, within BPHYT_RS04080 at 930.650 kb on + strand, within BPHYT_RS04080 at 930.651 kb on - strand, within BPHYT_RS04080 at 930.651 kb on - strand, within BPHYT_RS04080 at 930.676 kb on + strand, within BPHYT_RS04080 at 930.677 kb on - strand, within BPHYT_RS04080 at 931.235 kb on + strand, within BPHYT_RS04080 at 932.662 kb on + strand at 932.735 kb on + strand at 932.819 kb on + strand, within BPHYT_RS04090 at 932.820 kb on - strand, within BPHYT_RS04090 at 933.055 kb on - strand, within BPHYT_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 929,483 - +1.0 929,506 + +1.0 929,507 - -0.2 929,587 - -0.5 929,682 + -0.6 929,963 + BPHYT_RS04075 0.35 -0.1 929,978 + BPHYT_RS04075 0.39 -0.3 929,979 - BPHYT_RS04075 0.39 -0.1 930,011 + BPHYT_RS04075 0.47 +0.6 930,012 - BPHYT_RS04075 0.47 -0.6 930,013 + BPHYT_RS04075 0.47 -0.8 930,650 + BPHYT_RS04080 0.14 -1.3 930,650 + BPHYT_RS04080 0.14 -3.0 930,651 - BPHYT_RS04080 0.14 -3.0 930,651 - BPHYT_RS04080 0.14 -2.4 930,676 + BPHYT_RS04080 0.16 -2.7 930,677 - BPHYT_RS04080 0.16 -1.6 931,235 + BPHYT_RS04080 0.47 -1.2 932,662 + +0.3 932,735 + -0.3 932,819 + BPHYT_RS04090 0.11 +1.1 932,820 - BPHYT_RS04090 0.11 +0.9 933,055 - BPHYT_RS04090 0.32 +0.1
Or see this region's nucleotide sequence