Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03860 and BPHYT_RS03865 are separated by 390 nucleotides BPHYT_RS03865 and BPHYT_RS03870 are separated by 33 nucleotides
BPHYT_RS03860: BPHYT_RS03860 - MFS transporter, at 874,098 to 875,309
_RS03860
BPHYT_RS03865: BPHYT_RS03865 - FAD-binding molybdopterin dehydrogenase, at 875,700 to 877,223
_RS03865
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.751 kb on + strand, within BPHYT_RS03860 at 875.126 kb on - strand, within BPHYT_RS03860 at 875.126 kb on - strand, within BPHYT_RS03860 at 875.162 kb on + strand, within BPHYT_RS03860 at 875.163 kb on - strand, within BPHYT_RS03860 at 875.163 kb on - strand, within BPHYT_RS03860 at 875.185 kb on + strand, within BPHYT_RS03860 at 875.185 kb on + strand, within BPHYT_RS03860 at 875.420 kb on + strand at 875.422 kb on + strand at 875.422 kb on + strand at 875.423 kb on - strand at 875.477 kb on + strand at 875.590 kb on - strand at 875.612 kb on + strand at 875.622 kb on - strand at 875.692 kb on - strand at 875.721 kb on + strand at 875.781 kb on + strand at 875.781 kb on + strand at 875.949 kb on + strand, within BPHYT_RS03865 at 875.950 kb on - strand, within BPHYT_RS03865 at 876.098 kb on + strand, within BPHYT_RS03865 at 876.098 kb on + strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.633 kb on - strand, within BPHYT_RS03865 at 877.095 kb on + strand at 877.221 kb on + strand at 877.591 kb on - strand, within BPHYT_RS03870 at 877.591 kb on - strand, within BPHYT_RS03870 at 877.834 kb on - strand, within BPHYT_RS03870 at 877.891 kb on - strand, within BPHYT_RS03870 at 878.133 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 874,751 + BPHYT_RS03860 0.54 +1.2 875,126 - BPHYT_RS03860 0.85 -0.3 875,126 - BPHYT_RS03860 0.85 -0.1 875,162 + BPHYT_RS03860 0.88 -1.0 875,163 - BPHYT_RS03860 0.88 -1.1 875,163 - BPHYT_RS03860 0.88 -0.0 875,185 + BPHYT_RS03860 0.90 -0.0 875,185 + BPHYT_RS03860 0.90 -2.1 875,420 + -0.9 875,422 + -0.0 875,422 + -0.5 875,423 - -1.5 875,477 + -1.2 875,590 - +1.3 875,612 + +2.3 875,622 - -0.0 875,692 - +0.1 875,721 + -1.9 875,781 + -2.9 875,781 + +0.2 875,949 + BPHYT_RS03865 0.16 +0.5 875,950 - BPHYT_RS03865 0.16 +0.4 876,098 + BPHYT_RS03865 0.26 -0.2 876,098 + BPHYT_RS03865 0.26 -0.1 876,099 - BPHYT_RS03865 0.26 +0.3 876,099 - BPHYT_RS03865 0.26 -0.4 876,099 - BPHYT_RS03865 0.26 +1.2 876,269 + BPHYT_RS03865 0.37 +2.7 876,269 + BPHYT_RS03865 0.37 +1.5 876,269 + BPHYT_RS03865 0.37 +1.3 876,633 - BPHYT_RS03865 0.61 +0.1 877,095 + +0.6 877,221 + -0.1 877,591 - BPHYT_RS03870 0.14 +0.3 877,591 - BPHYT_RS03870 0.14 +0.1 877,834 - BPHYT_RS03870 0.24 +0.4 877,891 - BPHYT_RS03870 0.27 -0.7 878,133 + BPHYT_RS03870 0.37 -0.0 878,139 + BPHYT_RS03870 0.37 -0.8 878,139 + BPHYT_RS03870 0.37 -0.7 878,140 - BPHYT_RS03870 0.37 -0.1 878,140 - BPHYT_RS03870 0.37 -0.0 878,140 - BPHYT_RS03870 0.37 -2.7 878,140 - BPHYT_RS03870 0.37 -0.9
Or see this region's nucleotide sequence