Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03635 and BPHYT_RS03640 are separated by 71 nucleotides BPHYT_RS03640 and BPHYT_RS03645 are separated by 84 nucleotides
BPHYT_RS03635: BPHYT_RS03635 - ABC transporter permease, at 825,742 to 826,818
_RS03635
BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957
_RS03640
BPHYT_RS03645: BPHYT_RS03645 - tRNA dimethylallyltransferase, at 828,042 to 828,989
_RS03645
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 825.963 kb on - strand, within BPHYT_RS03635 at 825.990 kb on - strand, within BPHYT_RS03635 at 826.056 kb on - strand, within BPHYT_RS03635 at 826.137 kb on - strand, within BPHYT_RS03635 at 826.182 kb on - strand, within BPHYT_RS03635 at 826.296 kb on - strand, within BPHYT_RS03635 at 827.241 kb on + strand, within BPHYT_RS03640 at 827.364 kb on + strand, within BPHYT_RS03640 at 827.427 kb on - strand, within BPHYT_RS03640 at 827.597 kb on + strand, within BPHYT_RS03640 at 827.598 kb on - strand, within BPHYT_RS03640 at 827.684 kb on + strand, within BPHYT_RS03640 at 827.955 kb on + strand at 827.986 kb on + strand at 828.196 kb on + strand, within BPHYT_RS03645 at 828.271 kb on - strand, within BPHYT_RS03645 at 828.474 kb on - strand, within BPHYT_RS03645 at 828.667 kb on + strand, within BPHYT_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 825,963 - BPHYT_RS03635 0.21 -2.4 825,990 - BPHYT_RS03635 0.23 +0.1 826,056 - BPHYT_RS03635 0.29 +0.1 826,137 - BPHYT_RS03635 0.37 -0.3 826,182 - BPHYT_RS03635 0.41 +0.2 826,296 - BPHYT_RS03635 0.51 +0.8 827,241 + BPHYT_RS03640 0.33 -2.0 827,364 + BPHYT_RS03640 0.44 -2.0 827,427 - BPHYT_RS03640 0.50 -0.5 827,597 + BPHYT_RS03640 0.66 +1.3 827,598 - BPHYT_RS03640 0.66 +2.3 827,684 + BPHYT_RS03640 0.74 -0.3 827,955 + -1.0 827,986 + -0.2 828,196 + BPHYT_RS03645 0.16 -1.2 828,271 - BPHYT_RS03645 0.24 -0.3 828,474 - BPHYT_RS03645 0.46 -1.8 828,667 + BPHYT_RS03645 0.66 -0.9
Or see this region's nucleotide sequence