Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03560 and BPHYT_RS03565 are separated by 71 nucleotides BPHYT_RS03565 and BPHYT_RS03570 are separated by 330 nucleotides
BPHYT_RS03560: BPHYT_RS03560 - DNA repair protein, at 807,582 to 809,252
_RS03560
BPHYT_RS03565: BPHYT_RS03565 - NAD kinase, at 809,324 to 810,226
_RS03565
BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576
_RS03570
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 808.382 kb on - strand, within BPHYT_RS03560 at 808.382 kb on - strand, within BPHYT_RS03560 at 808.397 kb on - strand, within BPHYT_RS03560 at 808.919 kb on + strand, within BPHYT_RS03560 at 808.947 kb on + strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 810.236 kb on - strand at 810.236 kb on - strand at 810.242 kb on + strand at 810.242 kb on + strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.246 kb on + strand at 810.247 kb on - strand at 810.325 kb on + strand at 810.514 kb on + strand at 810.561 kb on + strand at 810.562 kb on - strand at 810.605 kb on + strand at 810.844 kb on + strand, within BPHYT_RS03570 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 811.003 kb on + strand, within BPHYT_RS03570 at 811.004 kb on - strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.092 kb on - strand, within BPHYT_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 808,382 - BPHYT_RS03560 0.48 -0.3 808,382 - BPHYT_RS03560 0.48 +0.9 808,397 - BPHYT_RS03560 0.49 -0.2 808,919 + BPHYT_RS03560 0.80 -0.0 808,947 + BPHYT_RS03560 0.82 -0.8 808,948 - BPHYT_RS03560 0.82 -0.1 808,948 - BPHYT_RS03560 0.82 +0.3 810,236 - -0.7 810,236 - +0.8 810,242 + -0.8 810,242 + -0.0 810,243 - -0.9 810,243 - -0.4 810,243 - -0.6 810,243 - +0.4 810,243 - -0.4 810,243 - -0.3 810,246 + -0.4 810,247 - -0.3 810,325 + +1.7 810,514 + +1.0 810,561 + +2.3 810,562 - -3.2 810,605 + -1.6 810,844 + BPHYT_RS03570 0.28 -2.4 810,844 + BPHYT_RS03570 0.28 -1.7 810,845 - BPHYT_RS03570 0.28 -2.7 810,845 - BPHYT_RS03570 0.28 -2.4 810,845 - BPHYT_RS03570 0.28 -1.2 811,003 + BPHYT_RS03570 0.44 +0.8 811,004 - BPHYT_RS03570 0.44 -1.5 811,091 + BPHYT_RS03570 0.52 -0.9 811,091 + BPHYT_RS03570 0.52 -1.1 811,091 + BPHYT_RS03570 0.52 -0.0 811,092 - BPHYT_RS03570 0.52 +0.7
Or see this region's nucleotide sequence