Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03380 and BPHYT_RS03385 are separated by 114 nucleotides BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides BPHYT_RS03390 and BPHYT_RS03395 are separated by 218 nucleotides
BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617
_RS03380
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
Position (kb) 762
763 Strain fitness (log2 ratio) -1
0
1
2
3 at 761.543 kb on + strand at 761.544 kb on - strand at 761.596 kb on + strand at 761.597 kb on - strand at 761.616 kb on - strand at 761.722 kb on + strand at 761.734 kb on - strand at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390 at 762.785 kb on - strand, within BPHYT_RS03390 at 762.854 kb on - strand, within BPHYT_RS03390 at 762.999 kb on - strand at 763.333 kb on + strand, within BPHYT_RS03395 at 763.334 kb on - strand, within BPHYT_RS03395 at 763.494 kb on + strand, within BPHYT_RS03395 at 763.669 kb on + strand, within BPHYT_RS03395 at 763.731 kb on + strand, within BPHYT_RS03395 at 763.840 kb on - strand, within BPHYT_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 761,543 + +0.1 761,544 - -1.5 761,596 + -0.4 761,597 - +3.1 761,616 - -0.1 761,722 + +1.6 761,734 - -0.3 762,306 + BPHYT_RS03385 0.77 -0.3 762,325 + BPHYT_RS03385 0.80 -0.0 762,325 + BPHYT_RS03385 0.80 -0.2 762,432 + -0.2 762,433 - -0.1 762,462 + -0.1 762,463 - -0.3 762,607 + BPHYT_RS03390 0.17 -0.1 762,785 - BPHYT_RS03390 0.63 +0.7 762,854 - BPHYT_RS03390 0.81 +0.4 762,999 - -0.2 763,333 + BPHYT_RS03395 0.14 +0.0 763,334 - BPHYT_RS03395 0.15 +0.1 763,494 + BPHYT_RS03395 0.27 +2.7 763,669 + BPHYT_RS03395 0.40 +0.4 763,731 + BPHYT_RS03395 0.45 -0.7 763,840 - BPHYT_RS03395 0.53 -0.1
Or see this region's nucleotide sequence