Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02775 and BPHYT_RS02780 are separated by 363 nucleotides BPHYT_RS02780 and BPHYT_RS02785 are separated by 42 nucleotides BPHYT_RS02785 and BPHYT_RS02790 are separated by 192 nucleotides
BPHYT_RS02775: BPHYT_RS02775 - RNA polymerase sigma 70, at 623,239 to 624,174
_RS02775
BPHYT_RS02780: BPHYT_RS02780 - deacylase, at 624,538 to 625,101
_RS02780
BPHYT_RS02785: BPHYT_RS02785 - hypothetical protein, at 625,144 to 625,527
_RS02785
BPHYT_RS02790: BPHYT_RS02790 - hypothetical protein, at 625,720 to 626,763
_RS02790
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 624.177 kb on - strand at 624.267 kb on + strand at 624.267 kb on + strand at 624.268 kb on - strand at 624.287 kb on + strand at 624.288 kb on - strand at 624.288 kb on - strand at 624.363 kb on + strand at 624.371 kb on - strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.396 kb on + strand at 624.397 kb on - strand at 624.429 kb on + strand at 624.456 kb on - strand at 624.456 kb on - strand at 624.482 kb on + strand at 624.482 kb on + strand at 624.483 kb on - strand at 624.500 kb on + strand at 624.536 kb on - strand at 624.555 kb on + strand at 625.001 kb on - strand, within BPHYT_RS02780 at 625.065 kb on - strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.079 kb on + strand at 625.080 kb on - strand at 625.081 kb on + strand at 625.081 kb on + strand at 625.091 kb on - strand at 625.255 kb on + strand, within BPHYT_RS02785 at 625.256 kb on - strand, within BPHYT_RS02785 at 625.256 kb on - strand, within BPHYT_RS02785 at 625.263 kb on + strand, within BPHYT_RS02785 at 625.264 kb on - strand, within BPHYT_RS02785 at 625.450 kb on + strand, within BPHYT_RS02785 at 625.464 kb on + strand, within BPHYT_RS02785 at 625.464 kb on + strand, within BPHYT_RS02785 at 625.790 kb on + strand at 625.831 kb on + strand, within BPHYT_RS02790 at 625.831 kb on + strand, within BPHYT_RS02790 at 625.832 kb on - strand, within BPHYT_RS02790 at 626.244 kb on - strand, within BPHYT_RS02790 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.382 kb on - strand, within BPHYT_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 624,177 - -1.2 624,267 + +0.4 624,267 + +0.7 624,268 - +0.3 624,287 + +0.6 624,288 - +0.4 624,288 - +0.1 624,363 + -0.3 624,371 - +0.5 624,396 + -0.4 624,396 + -0.2 624,396 + +0.6 624,396 + +0.0 624,397 - -0.4 624,429 + +0.1 624,456 - +0.8 624,456 - +1.6 624,482 + -0.1 624,482 + -1.4 624,483 - -1.6 624,500 + -0.2 624,536 - -0.5 624,555 + -0.4 625,001 - BPHYT_RS02780 0.82 -2.2 625,065 - -0.7 625,079 + +1.8 625,079 + +0.5 625,079 + -0.1 625,079 + +1.7 625,079 + -3.0 625,080 - +0.4 625,081 + +3.9 625,081 + +0.6 625,091 - +1.6 625,255 + BPHYT_RS02785 0.29 -0.0 625,256 - BPHYT_RS02785 0.29 -1.1 625,256 - BPHYT_RS02785 0.29 +0.2 625,263 + BPHYT_RS02785 0.31 +0.3 625,264 - BPHYT_RS02785 0.31 +1.0 625,450 + BPHYT_RS02785 0.80 +0.1 625,464 + BPHYT_RS02785 0.83 +0.4 625,464 + BPHYT_RS02785 0.83 -1.7 625,790 + -0.4 625,831 + BPHYT_RS02790 0.11 +1.4 625,831 + BPHYT_RS02790 0.11 -1.3 625,832 - BPHYT_RS02790 0.11 -0.7 626,244 - BPHYT_RS02790 0.50 -0.7 626,381 + BPHYT_RS02790 0.63 +0.7 626,381 + BPHYT_RS02790 0.63 -0.9 626,382 - BPHYT_RS02790 0.63 +0.1
Or see this region's nucleotide sequence