Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02750 and BPHYT_RS02755 are separated by 92 nucleotides BPHYT_RS02755 and BPHYT_RS02760 are separated by 28 nucleotides BPHYT_RS02760 and BPHYT_RS02765 are separated by 35 nucleotides
BPHYT_RS02750: BPHYT_RS02750 - hypothetical protein, at 618,326 to 619,651
_RS02750
BPHYT_RS02755: BPHYT_RS02755 - cyd operon protein YbgT, at 619,744 to 619,857
_RS02755
BPHYT_RS02760: BPHYT_RS02760 - cytochrome BD oxidase subunit II, at 619,886 to 621,022
_RS02760
BPHYT_RS02765: BPHYT_RS02765 - cytochrome BD oxidase subunit I, at 621,058 to 622,650
_RS02765
Position (kb) 619
620
621
622 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 618.904 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750 at 618.983 kb on + strand, within BPHYT_RS02750 at 619.079 kb on + strand, within BPHYT_RS02750 at 619.079 kb on + strand, within BPHYT_RS02750 at 619.100 kb on - strand, within BPHYT_RS02750 at 619.131 kb on - strand, within BPHYT_RS02750 at 619.177 kb on + strand, within BPHYT_RS02750 at 619.178 kb on - strand at 619.180 kb on + strand, within BPHYT_RS02750 at 619.191 kb on - strand, within BPHYT_RS02750 at 619.322 kb on + strand, within BPHYT_RS02750 at 619.322 kb on + strand, within BPHYT_RS02750 at 619.328 kb on + strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.329 kb on - strand, within BPHYT_RS02750 at 619.397 kb on + strand, within BPHYT_RS02750 at 619.481 kb on + strand, within BPHYT_RS02750 at 619.482 kb on - strand, within BPHYT_RS02750 at 619.482 kb on - strand, within BPHYT_RS02750 at 619.526 kb on + strand at 619.649 kb on + strand at 619.650 kb on - strand at 619.803 kb on + strand, within BPHYT_RS02755 at 619.891 kb on - strand at 619.897 kb on + strand at 619.897 kb on + strand at 619.898 kb on - strand at 619.951 kb on - strand at 620.557 kb on - strand, within BPHYT_RS02760 at 620.677 kb on + strand, within BPHYT_RS02760 at 621.224 kb on + strand, within BPHYT_RS02765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 618,904 + BPHYT_RS02750 0.44 -0.2 618,983 + BPHYT_RS02750 0.50 -0.5 618,983 + BPHYT_RS02750 0.50 +1.4 619,079 + BPHYT_RS02750 0.57 -0.5 619,079 + BPHYT_RS02750 0.57 +0.1 619,100 - BPHYT_RS02750 0.58 -0.2 619,131 - BPHYT_RS02750 0.61 +0.0 619,177 + BPHYT_RS02750 0.64 +0.1 619,178 - +1.4 619,180 + BPHYT_RS02750 0.64 -0.4 619,191 - BPHYT_RS02750 0.65 -1.5 619,322 + BPHYT_RS02750 0.75 +0.1 619,322 + BPHYT_RS02750 0.75 +1.4 619,328 + BPHYT_RS02750 0.76 -0.6 619,329 - BPHYT_RS02750 0.76 +0.1 619,329 - BPHYT_RS02750 0.76 -0.8 619,329 - BPHYT_RS02750 0.76 -1.3 619,397 + BPHYT_RS02750 0.81 +0.5 619,481 + BPHYT_RS02750 0.87 -0.7 619,482 - BPHYT_RS02750 0.87 +0.8 619,482 - BPHYT_RS02750 0.87 -0.3 619,526 + -0.2 619,649 + -0.3 619,650 - +0.4 619,803 + BPHYT_RS02755 0.52 +1.7 619,891 - -0.2 619,897 + +0.9 619,897 + -0.8 619,898 - +0.9 619,951 - +1.2 620,557 - BPHYT_RS02760 0.59 +1.4 620,677 + BPHYT_RS02760 0.70 +2.3 621,224 + BPHYT_RS02765 0.10 +3.9
Or see this region's nucleotide sequence