Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02720 and BPHYT_RS02725 are separated by 371 nucleotides BPHYT_RS02725 and BPHYT_RS02730 are separated by 101 nucleotides
BPHYT_RS02720: BPHYT_RS02720 - MarR family transcriptional regulator, at 609,345 to 610,271
_RS02720
BPHYT_RS02725: BPHYT_RS02725 - GntR family transcriptional regulator, at 610,643 to 611,377
_RS02725
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 609.691 kb on + strand, within BPHYT_RS02720 at 610.213 kb on + strand at 610.213 kb on + strand at 610.213 kb on + strand at 610.214 kb on - strand at 610.293 kb on + strand at 610.295 kb on + strand at 610.295 kb on + strand at 610.313 kb on + strand at 610.313 kb on + strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.314 kb on - strand at 610.315 kb on + strand at 610.316 kb on - strand at 610.334 kb on - strand at 610.588 kb on + strand at 610.615 kb on - strand at 610.697 kb on + strand at 610.698 kb on - strand at 611.153 kb on + strand, within BPHYT_RS02725 at 611.154 kb on - strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.326 kb on + strand at 611.326 kb on + strand at 611.327 kb on - strand at 611.327 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.349 kb on - strand at 611.495 kb on + strand at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 609,691 + BPHYT_RS02720 0.37 +1.7 610,213 + +1.2 610,213 + +0.4 610,213 + +0.2 610,214 - -0.3 610,293 + +0.9 610,295 + +0.3 610,295 + +2.0 610,313 + +0.4 610,313 + +0.6 610,314 - -0.2 610,314 - +0.6 610,314 - +0.9 610,314 - +2.3 610,315 + +1.4 610,316 - -2.1 610,334 - +0.6 610,588 + -0.8 610,615 - +0.0 610,697 + -0.6 610,698 - -0.5 611,153 + BPHYT_RS02725 0.69 +0.8 611,154 - BPHYT_RS02725 0.70 -1.8 611,159 + BPHYT_RS02725 0.70 -1.2 611,159 + BPHYT_RS02725 0.70 -0.5 611,326 + +0.3 611,326 + +0.4 611,327 - -0.5 611,327 - -0.1 611,330 + -0.5 611,330 + -0.5 611,330 + -0.4 611,331 - -2.5 611,331 - -0.4 611,331 - -0.0 611,331 - +0.4 611,349 - +0.0 611,495 + +2.6 611,599 + BPHYT_RS02730 0.11 -0.3 611,600 - BPHYT_RS02730 0.11 +0.6 611,845 + BPHYT_RS02730 0.33 -1.1 611,846 - BPHYT_RS02730 0.33 -0.9 611,846 - BPHYT_RS02730 0.33 -0.2 611,917 + BPHYT_RS02730 0.40 -0.8 611,918 - BPHYT_RS02730 0.40 -1.8 612,040 + BPHYT_RS02730 0.51 -1.5 612,040 + BPHYT_RS02730 0.51 -0.2 612,040 + BPHYT_RS02730 0.51 -1.3 612,040 + BPHYT_RS02730 0.51 -0.8 612,241 + BPHYT_RS02730 0.69 -0.7 612,241 + BPHYT_RS02730 0.69 -0.5 612,242 - BPHYT_RS02730 0.69 +3.5 612,242 - BPHYT_RS02730 0.69 -0.1 612,242 - BPHYT_RS02730 0.69 -0.3 612,245 + BPHYT_RS02730 0.69 -1.2 612,246 - BPHYT_RS02730 0.69 -0.6
Or see this region's nucleotide sequence