Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02645 and BPHYT_RS02650 are separated by 114 nucleotides BPHYT_RS02650 and BPHYT_RS02655 are separated by 42 nucleotides BPHYT_RS02655 and BPHYT_RS02660 are separated by 36 nucleotides
BPHYT_RS02645: BPHYT_RS02645 - cytochrome oxidase subunit I, at 597,377 to 598,990
_RS02645
BPHYT_RS02650: BPHYT_RS02650 - membrane protein, at 599,105 to 599,239
_RS02650
BPHYT_RS02655: BPHYT_RS02655 - cytochrome C oxidase assembly protein, at 599,282 to 599,920
_RS02655
BPHYT_RS02660: BPHYT_RS02660 - membrane protein, at 599,957 to 600,166
_RS02660
Position (kb) 599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 598.355 kb on + strand, within BPHYT_RS02645 at 598.356 kb on - strand, within BPHYT_RS02645 at 598.836 kb on - strand at 598.836 kb on - strand at 599.036 kb on + strand at 599.036 kb on + strand at 599.075 kb on + strand at 599.132 kb on - strand, within BPHYT_RS02650 at 599.450 kb on - strand, within BPHYT_RS02655 at 599.470 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.594 kb on + strand, within BPHYT_RS02655 at 599.649 kb on - strand, within BPHYT_RS02655 at 599.673 kb on - strand, within BPHYT_RS02655 at 599.755 kb on - strand, within BPHYT_RS02655 at 600.124 kb on + strand, within BPHYT_RS02660 at 600.156 kb on + strand at 600.159 kb on + strand at 600.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 598,355 + BPHYT_RS02645 0.61 -0.7 598,356 - BPHYT_RS02645 0.61 -2.7 598,836 - -1.5 598,836 - -1.8 599,036 + -0.4 599,036 + -1.8 599,075 + -1.2 599,132 - BPHYT_RS02650 0.20 -4.6 599,450 - BPHYT_RS02655 0.26 -3.0 599,470 + BPHYT_RS02655 0.29 +0.7 599,594 + BPHYT_RS02655 0.49 +0.2 599,594 + BPHYT_RS02655 0.49 -0.0 599,649 - BPHYT_RS02655 0.57 -1.3 599,673 - BPHYT_RS02655 0.61 -3.4 599,755 - BPHYT_RS02655 0.74 -3.7 600,124 + BPHYT_RS02660 0.80 -1.3 600,156 + -0.4 600,159 + +0.1 600,184 + +0.5
Or see this region's nucleotide sequence