Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02480 and BPHYT_RS02485 are separated by 573 nucleotides BPHYT_RS02485 and BPHYT_RS02490 are separated by 105 nucleotides
BPHYT_RS02480: BPHYT_RS02480 - alkaline phosphatase, at 562,332 to 563,102
_RS02480
BPHYT_RS02485: BPHYT_RS02485 - membrane protein, at 563,676 to 564,464
_RS02485
BPHYT_RS02490: BPHYT_RS02490 - iron ABC transporter substrate-binding protein, at 564,570 to 565,685
_RS02490
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 563.144 kb on + strand at 563.197 kb on - strand at 563.204 kb on + strand at 563.205 kb on - strand at 563.286 kb on + strand at 563.546 kb on + strand at 563.638 kb on + strand at 563.639 kb on - strand at 563.652 kb on + strand at 563.667 kb on + strand at 563.691 kb on - strand at 564.285 kb on + strand, within BPHYT_RS02485 at 564.286 kb on - strand, within BPHYT_RS02485 at 564.570 kb on - strand at 564.586 kb on + strand at 564.596 kb on - strand at 564.596 kb on - strand at 564.734 kb on + strand, within BPHYT_RS02490 at 564.734 kb on + strand, within BPHYT_RS02490 at 564.735 kb on - strand, within BPHYT_RS02490 at 564.738 kb on + strand, within BPHYT_RS02490 at 564.932 kb on + strand, within BPHYT_RS02490 at 564.933 kb on + strand at 565.006 kb on - strand, within BPHYT_RS02490 at 565.149 kb on + strand, within BPHYT_RS02490 at 565.459 kb on - strand, within BPHYT_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 563,144 + -0.8 563,197 - -0.9 563,204 + +4.4 563,205 - -1.4 563,286 + +1.6 563,546 + -0.3 563,638 + -1.7 563,639 - +2.0 563,652 + +0.7 563,667 + -0.9 563,691 - -0.2 564,285 + BPHYT_RS02485 0.77 -1.3 564,286 - BPHYT_RS02485 0.77 -0.2 564,570 - -0.2 564,586 + +2.6 564,596 - +0.5 564,596 - -1.1 564,734 + BPHYT_RS02490 0.15 -0.2 564,734 + BPHYT_RS02490 0.15 +0.9 564,735 - BPHYT_RS02490 0.15 +0.4 564,738 + BPHYT_RS02490 0.15 +0.5 564,932 + BPHYT_RS02490 0.32 -0.4 564,933 + +0.1 565,006 - BPHYT_RS02490 0.39 +1.2 565,149 + BPHYT_RS02490 0.52 -0.5 565,459 - BPHYT_RS02490 0.80 +0.1
Or see this region's nucleotide sequence