Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotides BPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotides BPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides BPHYT_RS02470 and BPHYT_RS02475 are separated by 218 nucleotides
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837
_RS02460
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414
_RS02470
BPHYT_RS02475: BPHYT_RS02475 - membrane protein, at 560,633 to 562,300
_RS02475
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1 at 558.129 kb on - strand, within BPHYT_RS02460 at 558.133 kb on - strand, within BPHYT_RS02460 at 558.242 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.515 kb on + strand, within BPHYT_RS02460 at 558.696 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 559.028 kb on - strand, within BPHYT_RS02465 at 559.243 kb on - strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.407 kb on + strand, within BPHYT_RS02465 at 559.408 kb on - strand, within BPHYT_RS02465 at 559.702 kb on - strand at 559.971 kb on - strand at 560.230 kb on + strand, within BPHYT_RS02470 at 560.269 kb on + strand, within BPHYT_RS02470 at 560.281 kb on + strand, within BPHYT_RS02470 at 560.282 kb on - strand, within BPHYT_RS02470 at 560.395 kb on - strand at 560.431 kb on + strand at 560.431 kb on + strand at 560.510 kb on + strand at 560.554 kb on + strand at 560.555 kb on - strand at 560.562 kb on + strand at 560.562 kb on + strand at 560.563 kb on - strand at 560.632 kb on + strand at 560.633 kb on - strand at 560.633 kb on - strand at 560.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 558,129 - BPHYT_RS02460 0.11 +1.1 558,133 - BPHYT_RS02460 0.12 +1.1 558,242 + BPHYT_RS02460 0.25 +1.4 558,442 + BPHYT_RS02460 0.50 +1.5 558,442 + BPHYT_RS02460 0.50 +0.0 558,442 + BPHYT_RS02460 0.50 -0.1 558,515 + BPHYT_RS02460 0.60 -2.4 558,696 + BPHYT_RS02460 0.82 +1.3 558,700 + BPHYT_RS02460 0.83 -0.8 558,700 + BPHYT_RS02460 0.83 +0.4 558,700 + BPHYT_RS02460 0.83 -0.4 558,701 - BPHYT_RS02460 0.83 -0.9 558,701 - BPHYT_RS02460 0.83 -0.7 558,701 - BPHYT_RS02460 0.83 +0.2 559,028 - BPHYT_RS02465 0.22 -0.1 559,243 - BPHYT_RS02465 0.47 +0.5 559,326 + BPHYT_RS02465 0.57 +0.3 559,326 + BPHYT_RS02465 0.57 +0.1 559,326 + BPHYT_RS02465 0.57 +1.7 559,327 - BPHYT_RS02465 0.57 +0.7 559,327 - BPHYT_RS02465 0.57 -0.1 559,407 + BPHYT_RS02465 0.66 -0.1 559,408 - BPHYT_RS02465 0.66 +0.2 559,702 - +0.9 559,971 - -1.6 560,230 + BPHYT_RS02470 0.73 +0.1 560,269 + BPHYT_RS02470 0.79 -1.6 560,281 + BPHYT_RS02470 0.80 +0.4 560,282 - BPHYT_RS02470 0.81 -0.8 560,395 - +0.2 560,431 + +0.5 560,431 + -0.2 560,510 + +0.2 560,554 + -0.3 560,555 - -0.1 560,562 + +0.6 560,562 + -1.0 560,563 - +0.3 560,632 + -0.6 560,633 - +0.6 560,633 - +0.8 560,646 + -0.5
Or see this region's nucleotide sequence