Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02170 and BPHYT_RS02175 are separated by 41 nucleotides BPHYT_RS02175 and BPHYT_RS02180 are separated by 308 nucleotides
BPHYT_RS02170: BPHYT_RS02170 - type VI secretion protein, at 497,269 to 499,155
_RS02170
BPHYT_RS02175: BPHYT_RS02175 - type VI secretion protein ImpA, at 499,197 to 501,539
_RS02175
BPHYT_RS02180: BPHYT_RS02180 - hypothetical protein, at 501,848 to 502,372
_RS02180
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 498.584 kb on - strand, within BPHYT_RS02170 at 498.757 kb on + strand, within BPHYT_RS02170 at 498.757 kb on + strand, within BPHYT_RS02170 at 498.779 kb on - strand, within BPHYT_RS02170 at 498.847 kb on + strand, within BPHYT_RS02170 at 498.847 kb on + strand, within BPHYT_RS02170 at 498.848 kb on - strand, within BPHYT_RS02170 at 499.164 kb on - strand at 499.276 kb on + strand at 499.317 kb on + strand at 499.324 kb on - strand at 499.655 kb on - strand, within BPHYT_RS02175 at 499.865 kb on + strand, within BPHYT_RS02175 at 500.077 kb on - strand, within BPHYT_RS02175 at 500.091 kb on + strand, within BPHYT_RS02175 at 500.343 kb on - strand, within BPHYT_RS02175 at 500.371 kb on - strand, within BPHYT_RS02175 at 500.662 kb on - strand at 500.685 kb on + strand, within BPHYT_RS02175 at 500.686 kb on - strand, within BPHYT_RS02175 at 500.702 kb on + strand, within BPHYT_RS02175 at 500.703 kb on - strand, within BPHYT_RS02175 at 500.988 kb on - strand, within BPHYT_RS02175 at 501.572 kb on - strand at 501.667 kb on + strand at 501.667 kb on + strand at 501.746 kb on - strand at 502.019 kb on - strand, within BPHYT_RS02180 at 502.178 kb on + strand, within BPHYT_RS02180 at 502.261 kb on + strand, within BPHYT_RS02180 at 502.410 kb on - strand at 502.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 498,584 - BPHYT_RS02170 0.70 +0.4 498,757 + BPHYT_RS02170 0.79 +0.0 498,757 + BPHYT_RS02170 0.79 +0.0 498,779 - BPHYT_RS02170 0.80 +2.6 498,847 + BPHYT_RS02170 0.84 +0.8 498,847 + BPHYT_RS02170 0.84 -0.5 498,848 - BPHYT_RS02170 0.84 -0.9 499,164 - -0.0 499,276 + +0.1 499,317 + +0.1 499,324 - +0.3 499,655 - BPHYT_RS02175 0.20 -0.1 499,865 + BPHYT_RS02175 0.29 -0.3 500,077 - BPHYT_RS02175 0.38 +0.6 500,091 + BPHYT_RS02175 0.38 -0.3 500,343 - BPHYT_RS02175 0.49 +0.1 500,371 - BPHYT_RS02175 0.50 +0.2 500,662 - -0.7 500,685 + BPHYT_RS02175 0.64 -1.4 500,686 - BPHYT_RS02175 0.64 -0.1 500,702 + BPHYT_RS02175 0.64 -0.3 500,703 - BPHYT_RS02175 0.64 +4.9 500,988 - BPHYT_RS02175 0.76 -0.2 501,572 - -0.3 501,667 + +0.7 501,667 + -0.4 501,746 - -0.8 502,019 - BPHYT_RS02180 0.33 -1.2 502,178 + BPHYT_RS02180 0.63 -1.5 502,261 + BPHYT_RS02180 0.79 +0.7 502,410 - +0.4 502,516 + +0.5
Or see this region's nucleotide sequence