Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02135 and BPHYT_RS02140 are separated by 347 nucleotides BPHYT_RS02140 and BPHYT_RS02145 are separated by 136 nucleotides
BPHYT_RS02135: BPHYT_RS02135 - glyoxylate reductase, at 489,128 to 490,069
_RS02135
BPHYT_RS02140: BPHYT_RS02140 - alpha/beta hydrolase, at 490,417 to 491,019
_RS02140
BPHYT_RS02145: BPHYT_RS02145 - sulfate ABC transporter substrate-binding protein, at 491,156 to 492,181
_RS02145
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 489.763 kb on - strand, within BPHYT_RS02135 at 489.818 kb on - strand, within BPHYT_RS02135 at 490.183 kb on + strand at 490.184 kb on - strand at 490.184 kb on - strand at 490.189 kb on + strand at 490.574 kb on + strand, within BPHYT_RS02140 at 490.575 kb on - strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.663 kb on + strand, within BPHYT_RS02140 at 490.664 kb on - strand, within BPHYT_RS02140 at 490.685 kb on - strand, within BPHYT_RS02140 at 490.890 kb on + strand, within BPHYT_RS02140 at 490.891 kb on - strand, within BPHYT_RS02140 at 491.000 kb on + strand at 491.000 kb on + strand at 491.077 kb on + strand at 491.078 kb on - strand at 491.291 kb on + strand, within BPHYT_RS02145 at 491.292 kb on - strand, within BPHYT_RS02145 at 491.324 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.649 kb on - strand, within BPHYT_RS02145 at 491.654 kb on + strand, within BPHYT_RS02145 at 491.967 kb on - strand, within BPHYT_RS02145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 489,763 - BPHYT_RS02135 0.67 -0.1 489,818 - BPHYT_RS02135 0.73 -0.2 490,183 + +0.8 490,184 - +0.9 490,184 - -0.7 490,189 + -0.2 490,574 + BPHYT_RS02140 0.26 -0.2 490,575 - BPHYT_RS02140 0.26 -0.1 490,638 + BPHYT_RS02140 0.37 +0.1 490,638 + BPHYT_RS02140 0.37 -0.6 490,639 - BPHYT_RS02140 0.37 +0.4 490,639 - BPHYT_RS02140 0.37 -0.7 490,663 + BPHYT_RS02140 0.41 +0.1 490,664 - BPHYT_RS02140 0.41 +0.7 490,685 - BPHYT_RS02140 0.44 +0.5 490,890 + BPHYT_RS02140 0.78 -0.2 490,891 - BPHYT_RS02140 0.79 +1.7 491,000 + -0.4 491,000 + -0.7 491,077 + +0.7 491,078 - -0.2 491,291 + BPHYT_RS02145 0.13 +0.2 491,292 - BPHYT_RS02145 0.13 -2.7 491,324 + BPHYT_RS02145 0.16 +0.3 491,421 + BPHYT_RS02145 0.26 -0.7 491,421 + BPHYT_RS02145 0.26 +0.4 491,649 - BPHYT_RS02145 0.48 -1.5 491,654 + BPHYT_RS02145 0.49 +0.1 491,967 - BPHYT_RS02145 0.79 -0.7
Or see this region's nucleotide sequence