Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02090 and BPHYT_RS02095 are separated by 283 nucleotides BPHYT_RS02095 and BPHYT_RS02100 are separated by 65 nucleotides BPHYT_RS02100 and BPHYT_RS02105 are separated by 111 nucleotides
BPHYT_RS02090: BPHYT_RS02090 - 2-nitropropane dioxygenase, at 481,918 to 482,877
_RS02090
BPHYT_RS02095: BPHYT_RS02095 - alpha/beta hydrolase, at 483,161 to 484,051
_RS02095
BPHYT_RS02100: BPHYT_RS02100 - AsnC family transcriptional regulator, at 484,117 to 484,587
_RS02100
BPHYT_RS02105: BPHYT_RS02105 - multidrug DMT transporter permease, at 484,699 to 485,601
_RS02105
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 482.175 kb on + strand, within BPHYT_RS02090 at 482.178 kb on - strand, within BPHYT_RS02090 at 482.220 kb on - strand, within BPHYT_RS02090 at 482.270 kb on + strand, within BPHYT_RS02090 at 482.270 kb on + strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.271 kb on - strand, within BPHYT_RS02090 at 482.357 kb on - strand, within BPHYT_RS02090 at 482.357 kb on - strand, within BPHYT_RS02090 at 482.510 kb on + strand, within BPHYT_RS02090 at 482.510 kb on + strand, within BPHYT_RS02090 at 482.511 kb on - strand, within BPHYT_RS02090 at 482.514 kb on + strand, within BPHYT_RS02090 at 482.515 kb on - strand, within BPHYT_RS02090 at 482.877 kb on + strand at 482.877 kb on + strand at 482.877 kb on + strand at 483.078 kb on + strand at 483.079 kb on - strand at 483.079 kb on - strand at 483.079 kb on - strand at 483.348 kb on - strand, within BPHYT_RS02095 at 483.570 kb on - strand, within BPHYT_RS02095 at 483.570 kb on - strand, within BPHYT_RS02095 at 483.570 kb on - strand, within BPHYT_RS02095 at 483.674 kb on + strand, within BPHYT_RS02095 at 483.675 kb on - strand, within BPHYT_RS02095 at 483.675 kb on - strand, within BPHYT_RS02095 at 483.675 kb on - strand, within BPHYT_RS02095 at 483.675 kb on - strand at 483.794 kb on + strand, within BPHYT_RS02095 at 483.980 kb on + strand at 483.980 kb on + strand at 483.981 kb on - strand at 483.981 kb on - strand at 483.981 kb on - strand at 484.050 kb on - strand at 484.050 kb on - strand at 484.236 kb on - strand, within BPHYT_RS02100 at 484.605 kb on - strand at 484.828 kb on - strand, within BPHYT_RS02105 at 484.865 kb on + strand, within BPHYT_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 482,175 + BPHYT_RS02090 0.27 -0.6 482,178 - BPHYT_RS02090 0.27 +0.1 482,220 - BPHYT_RS02090 0.31 -0.2 482,270 + BPHYT_RS02090 0.37 -0.4 482,270 + BPHYT_RS02090 0.37 +0.3 482,271 - BPHYT_RS02090 0.37 +0.1 482,271 - BPHYT_RS02090 0.37 -0.5 482,271 - BPHYT_RS02090 0.37 -1.3 482,357 - BPHYT_RS02090 0.46 -0.1 482,357 - BPHYT_RS02090 0.46 -2.4 482,510 + BPHYT_RS02090 0.62 -1.1 482,510 + BPHYT_RS02090 0.62 -0.3 482,511 - BPHYT_RS02090 0.62 -0.4 482,514 + BPHYT_RS02090 0.62 +0.3 482,515 - BPHYT_RS02090 0.62 +2.1 482,877 + +0.3 482,877 + -0.8 482,877 + -0.3 483,078 + -0.5 483,079 - +0.0 483,079 - +1.2 483,079 - +0.3 483,348 - BPHYT_RS02095 0.21 +0.8 483,570 - BPHYT_RS02095 0.46 +1.2 483,570 - BPHYT_RS02095 0.46 -0.5 483,570 - BPHYT_RS02095 0.46 -0.8 483,674 + BPHYT_RS02095 0.58 +0.7 483,675 - BPHYT_RS02095 0.58 -2.1 483,675 - BPHYT_RS02095 0.58 -0.6 483,675 - BPHYT_RS02095 0.58 -1.6 483,675 - +0.3 483,794 + BPHYT_RS02095 0.71 +0.7 483,980 + +0.8 483,980 + +2.8 483,981 - +3.2 483,981 - -0.7 483,981 - -1.4 484,050 - -0.7 484,050 - -0.3 484,236 - BPHYT_RS02100 0.25 -1.8 484,605 - +2.8 484,828 - BPHYT_RS02105 0.14 +0.0 484,865 + BPHYT_RS02105 0.18 -0.1
Or see this region's nucleotide sequence