Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01985 and BPHYT_RS01990 are separated by 422 nucleotides BPHYT_RS01990 and BPHYT_RS01995 are separated by 332 nucleotides
BPHYT_RS01985: BPHYT_RS01985 - hypothetical protein, at 448,426 to 449,049
_RS01985
BPHYT_RS01990: BPHYT_RS01990 - methyl-accepting chemotaxis protein, at 449,472 to 451,037
_RS01990
BPHYT_RS01995: BPHYT_RS01995 - pyrimidine permease, at 451,370 to 452,677
_RS01995
Position (kb) 449
450
451
452 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 448.880 kb on - strand, within BPHYT_RS01985 at 448.918 kb on + strand, within BPHYT_RS01985 at 449.048 kb on - strand at 449.048 kb on - strand at 449.153 kb on + strand at 449.154 kb on - strand at 449.154 kb on - strand at 449.206 kb on - strand at 449.224 kb on + strand at 449.224 kb on + strand at 449.226 kb on + strand at 449.226 kb on + strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.309 kb on + strand at 449.349 kb on + strand at 449.349 kb on + strand at 449.350 kb on - strand at 449.465 kb on + strand at 449.570 kb on + strand at 449.594 kb on + strand at 449.594 kb on + strand at 450.751 kb on + strand, within BPHYT_RS01990 at 451.009 kb on + strand at 451.054 kb on - strand at 451.111 kb on - strand at 451.287 kb on - strand at 451.342 kb on + strand at 451.382 kb on + strand at 451.450 kb on - strand at 451.558 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.616 kb on + strand, within BPHYT_RS01995 at 451.736 kb on + strand, within BPHYT_RS01995 at 451.736 kb on + strand, within BPHYT_RS01995 at 451.737 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand, within BPHYT_RS01995 at 451.989 kb on - strand at 451.998 kb on - strand, within BPHYT_RS01995 at 452.030 kb on - strand, within BPHYT_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 448,880 - BPHYT_RS01985 0.73 +1.3 448,918 + BPHYT_RS01985 0.79 +0.8 449,048 - +0.4 449,048 - +1.5 449,153 + +0.5 449,154 - -0.8 449,154 - -0.2 449,206 - +0.8 449,224 + -0.3 449,224 + -0.1 449,226 + -0.4 449,226 + -0.6 449,227 - -0.4 449,227 - +0.6 449,227 - +0.5 449,309 + +0.4 449,349 + +0.3 449,349 + +1.0 449,350 - -0.7 449,465 + -0.9 449,570 + +0.3 449,594 + -0.6 449,594 + -0.8 450,751 + BPHYT_RS01990 0.82 -0.2 451,009 + -0.1 451,054 - -2.5 451,111 - +0.2 451,287 - +2.2 451,342 + +0.6 451,382 + -0.8 451,450 - +0.2 451,558 + BPHYT_RS01995 0.14 -0.1 451,616 + BPHYT_RS01995 0.19 -0.7 451,616 + BPHYT_RS01995 0.19 -0.1 451,616 + BPHYT_RS01995 0.19 -0.3 451,736 + BPHYT_RS01995 0.28 -1.2 451,736 + BPHYT_RS01995 0.28 -1.2 451,737 - BPHYT_RS01995 0.28 -0.7 451,989 - BPHYT_RS01995 0.47 +0.4 451,989 - BPHYT_RS01995 0.47 +0.6 451,989 - BPHYT_RS01995 0.47 -2.5 451,989 - BPHYT_RS01995 0.47 +0.9 451,989 - +5.0 451,998 - BPHYT_RS01995 0.48 -1.2 452,030 - BPHYT_RS01995 0.50 +0.2
Or see this region's nucleotide sequence