Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01940 and BPHYT_RS01945 are separated by 79 nucleotides BPHYT_RS01945 and BPHYT_RS01950 are separated by 216 nucleotides BPHYT_RS01950 and BPHYT_RS01955 are separated by 26 nucleotides
BPHYT_RS01940: BPHYT_RS01940 - 16S rRNA methyltransferase, at 440,739 to 441,620
_RS01940
BPHYT_RS01945: BPHYT_RS01945 - hypothetical protein, at 441,700 to 442,122
_RS01945
BPHYT_RS01950: BPHYT_RS01950 - phosphoheptose isomerase, at 442,339 to 442,926
_RS01950
BPHYT_RS01955: BPHYT_RS01955 - hypothetical protein, at 442,953 to 443,750
_RS01955
Position (kb) 441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 440.779 kb on + strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.862 kb on + strand, within BPHYT_RS01940 at 440.919 kb on + strand, within BPHYT_RS01940 at 440.920 kb on - strand, within BPHYT_RS01940 at 441.006 kb on + strand, within BPHYT_RS01940 at 441.299 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.566 kb on - strand at 441.566 kb on - strand at 441.567 kb on + strand at 441.568 kb on - strand at 441.568 kb on - strand at 441.578 kb on + strand at 441.981 kb on + strand, within BPHYT_RS01945 at 441.981 kb on + strand, within BPHYT_RS01945 at 441.982 kb on - strand, within BPHYT_RS01945 at 441.982 kb on - strand, within BPHYT_RS01945 at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.213 kb on + strand at 442.214 kb on - strand at 442.329 kb on + strand at 442.619 kb on - strand, within BPHYT_RS01950 at 442.799 kb on + strand, within BPHYT_RS01950 at 442.800 kb on - strand, within BPHYT_RS01950 at 442.800 kb on - strand, within BPHYT_RS01950 at 442.852 kb on - strand, within BPHYT_RS01950 at 442.947 kb on + strand at 442.947 kb on + strand at 442.948 kb on - strand at 442.948 kb on - strand at 442.961 kb on - strand at 442.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 440,779 + -0.0 440,779 + +0.6 440,779 + +0.0 440,862 + BPHYT_RS01940 0.14 -0.6 440,919 + BPHYT_RS01940 0.20 +1.5 440,920 - BPHYT_RS01940 0.21 +0.5 441,006 + BPHYT_RS01940 0.30 -2.0 441,299 + BPHYT_RS01940 0.63 +0.0 441,343 + BPHYT_RS01940 0.68 -0.0 441,343 + BPHYT_RS01940 0.68 -0.1 441,344 - BPHYT_RS01940 0.69 +3.0 441,344 - BPHYT_RS01940 0.69 +0.4 441,565 + +1.2 441,565 + -1.0 441,565 + -0.5 441,565 + -0.2 441,565 + +2.2 441,565 + +1.8 441,566 - -0.2 441,566 - +1.0 441,567 + +1.2 441,568 - +1.0 441,568 - -0.8 441,578 + +1.0 441,981 + BPHYT_RS01945 0.66 +0.1 441,981 + BPHYT_RS01945 0.66 -0.2 441,982 - BPHYT_RS01945 0.67 +0.3 441,982 - BPHYT_RS01945 0.67 -0.5 442,213 + +0.2 442,213 + -0.0 442,213 + +1.2 442,213 + -0.6 442,213 + -0.7 442,214 - -1.0 442,329 + -0.8 442,619 - BPHYT_RS01950 0.48 -3.4 442,799 + BPHYT_RS01950 0.78 -0.9 442,800 - BPHYT_RS01950 0.78 -1.4 442,800 - BPHYT_RS01950 0.78 -2.4 442,852 - BPHYT_RS01950 0.87 -3.0 442,947 + -1.3 442,947 + -0.8 442,948 - -2.9 442,948 - -2.4 442,961 - +0.1 442,961 - -0.2
Or see this region's nucleotide sequence